Assay Summary H3K4me3 Summary Track Settings
 
Roadmap Epigenome H3K4me3 Summary for 121 sample type(s)

Track collection: Assay Summary

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     CD34 H3K4me3 20  CD34 Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4645 Pcnt=64 DonorID:culturedCD34_2/20/09)    Data format 
     CD15 H3K4me3 23.0  CD15 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.7312 Pcnt=97 DonorID:23.0)    Data format 
     AN H3K4me3 7  Adipose Nuclei H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3453 Pcnt=39 DonorID:7)    Data format 
     FL H3K4me3 76  Fetal Lung H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2218 Pcnt=13 DonorID:H-22676)    Data format 
     SSM H3K4me3 28  Stomach Smooth Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4503 Pcnt=62 DonorID:28)    Data format 
     MCD34 H3K4me3 17  Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5403 Pcnt=77 DonorID:RO01517)    Data format 
     MCD34 H3K4me3 80  Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2457 Pcnt=16 DonorID:RO01480)    Data format 
     SM H3K4me3 63  Skeletal Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2763 Pcnt=25 DonorID:63)    Data format 
     SM H3K4me3 19  Skeletal Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2829 Pcnt=26 DonorID:19)    Data format 
     AL H3K4me3 4  Adult Liver H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2413 Pcnt=15 DonorID:4)    Data format 
     iPS18c H3K4me3 47  iPS 18c H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5588 Pcnt=80 Library:Solexa-19747)    Data format 
     MCD34 H3K4me3 49  Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5962 Pcnt=84 DonorID:RO01549)    Data format 
     CD34 H3K4me3 29  CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5312 Pcnt=74 DonorID:CD34_39629)    Data format 
     BMDMSC H3K4me3 57  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6126 Pcnt=85 DonorID:57)    Data format 
     CD19 H3K4me3 1  CD19 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3814 Pcnt=51 DonorID:CD19_8/1/08)    Data format 
     iPS15b H3K4me3 43  iPS 15b H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3714 Pcnt=44 Library:Solexa-20743)    Data format 
     MCD34 H3K4me3 92  Mobilized CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2857 Pcnt=28 DonorID:RO01492)    Data format 
     RM H3K4me3 29  Rectal Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3461 Pcnt=41 DonorID:29)    Data format 
     FK H3K4me3 76  Fetal Kidney H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2123 Pcnt=10 DonorID:H-22676)    Data format 
     iPS18c H3K4me3 73  iPS 18c H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1963 Pcnt=5 Library:Solexa-15173)    Data format 
     ESI3 H3K4me3 74  ES-I3 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3698 Pcnt=43 Library:Solexa-15474)    Data format 
     CD19 H3K4me3 22  CD19 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3823 Pcnt=52 DonorID:CD19_12/22/08)    Data format 
     AL H3K4me3 5.0  Adult Liver H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=NA DonorID:5.0)    Data format 
     CD3 H3K4me3 61  CD3 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4738 Pcnt=66 DonorID:CD3_39661)    Data format 
     FB H3K4me3 10  Fetal Brain H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1128 Pcnt=2 DonorID:H-22510)    Data format 
     H1 H3K4me3 98  H1 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3314 Pcnt=36 Library:Solexa-10398)    Data format 
     FL H3K4me3 27  Fetal Lung H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1892 Pcnt=3 DonorID:H-22727)    Data format 
     MS H3K4me3 3  Muscle Satellite Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4243 Pcnt=59 DonorID:NA)    Data format 
     AK H3K4me3 27  Adult Kidney H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2112 Pcnt=8 DonorID:27)    Data format 
     MCD34 H3K4me3 28  Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6676 Pcnt=90 DonorID:RO01508)    Data format 
     iPS11a H3K4me3 33  iPS 11a H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3159 Pcnt=33 Library:Solexa-11733)    Data format 
     ESI3 H3K4me3 81  ES-I3 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4174 Pcnt=56 Library:Solexa-12681)    Data format 
     Treg H3K4me3 20  Treg Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4929 Pcnt=69 DonorID:20)    Data format 
     RSM H3K4me3 30  Rectal Smooth Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3023 Pcnt=31 DonorID:30)    Data format 
     CD3 H3K4me3 04  CD3 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3808 Pcnt=49 DonorID:CD3_39804)    Data format 
     CD34 H3K4me3 04  CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3749 Pcnt=46 DonorID:CD34_39804)    Data format 
     MS H3K4me3 2  Muscle Satellite Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4229 Pcnt=57 DonorID:NA)    Data format 
     AL H3K4me3 3.0  Adult Liver H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2193 Pcnt=11 DonorID:3.0)    Data format 
     DM H3K4me3 61  Duodenum Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3018 Pcnt=30 DonorID:61)    Data format 
     MCD34 H3K4me3 36  Mobilized CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2531 Pcnt=18 DonorID:RO01536)    Data format 
     CM H3K4me3 32  Colonic Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4897 Pcnt=67 DonorID:32)    Data format 
     H1 H3K4me3 22  H1 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2734 Pcnt=23 Library:Solexa-12522)    Data format 
     SM H3K4me3 62  Skeletal Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3359 Pcnt=38 DonorID:62)    Data format 
     RM H3K4me3 31  Rectal Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3226 Pcnt=34 DonorID:31)    Data format 
     iPS20b H3K4me3 e3  iPS 20b H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2085 Pcnt=7 DonorID:NA)    Data format 
     ESWA7 H3K4me3 62  ES-WA7 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4014 Pcnt=54 Library:Solexa-13062)    Data format 
     PI H3K4me3 27  Pancreatic Islets H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5002 Pcnt=70 DonorID:pancreaticisletsnormal_3/27/09)    Data format 
     H1 H3K4me3 38  H1 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4388 Pcnt=61 Library:Solexa-8038)    Data format 
     ADMSC H3K4me3 1  Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5364 Pcnt=75 DonorID:1)    Data format 
     MS H3K4me3 1  Muscle Satellite Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5469 Pcnt=79 DonorID:NA)    Data format 
     AN H3K4me3 92  Adipose Nuclei H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.4353 Pcnt=60)    Data format 
     AN H3K4me3 93  Adipose Nuclei H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2851 Pcnt=36)    Data format 
     AN H3K4me3 94  Adipose Nuclei H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.3591 Pcnt=40)    Data format 
     AN H3K4me3 95  Adipose Nuclei H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.5141 Pcnt=68)    Data format 
     BMDMSC H3K4me3 58  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.461 Pcnt=64)    Data format 
     BMDMSC H3K4me3 59  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.4278 Pcnt=56)    Data format 
     BMDMSC H3K4me3 60  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.4154 Pcnt=52)    Data format 
     BAC H3K4me3 12  Brain Anterior Caudate H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2409 Pcnt=28)    Data format 
     BCG H3K4me3 12  Brain Cingulate Gyrus H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2161 Pcnt=20)    Data format 
     BHM H3K4me3 12  Brain Hippocampus Middle H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.1582 Pcnt=4)    Data format 
     BITL H3K4me3 12  Brain Inferior Temporal Lobe H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2304 Pcnt=24)    Data format 
     BMFL H3K4me3 12  Brain Mid Frontal Lobe H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2001 Pcnt=16)    Data format 
     BSN H3K4me3 12  Brain Substantia Nigra H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.1703 Pcnt=8)    Data format 
     CD34 H3K4me3 23  CD34 Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2771 Pcnt=32)    Data format 
     CfBMDMSC H3K4me3 57  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.5794 Pcnt=72)    Data format 
     CfBMDMSC H3K4me3 59  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.6121 Pcnt=84)    Data format 
     CfBMDMSC H3K4me3 60  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.6988 Pcnt=96)    Data format 
     HUES48 H3K4me3 e3  HUES48 H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.6495 Pcnt=88)    Data format 
     HUES64 H3K4me3 e3  HUES64 H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.6513 Pcnt=92)    Data format 
     HUES6 H3K4me3  HUES6 H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.611 Pcnt=80)    Data format 
     HUES6 H3K4me3  HUES6 H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.5944 Pcnt=76)    Data format 
     MCD34 H3K4me3 RO01562  MCD34 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     FH H3K4me3 14  Fetal Heart H3K4me3 Signal from REMC/Broad (HOTSPOT_SCORE=0.2217 Pcnt=13)    Data format 
     MCD34 H3K4me3 62  Mobilized CD34 Primary Cells H3K4me3 Signal from REMC/Broad (HOTSPOT_SCORE=0.7285 Pcnt=100)    Data format 
     MSCDACC H3K4me3 93  Mesenchymal Stem Cell Derived Adipocyte Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.428 Pcnt=76)    Data format 
     ADMSCCC H3K4me3 92  Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.5236 Pcnt=85)    Data format 
     HUES64 H3K4me3 Row-1720  HUES64 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.6537 Pcnt=100)    Data format 
     ADMSCCC H3K4me3 93  Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3342 Pcnt=56)    Data format 
     BAG H3K4me3 112  Brain Angular Gyrus H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1688 Pcnt=17)    Data format 
     CD4M H3K4me3 20  CD4 Memory Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3634 Pcnt=63)    Data format 
     CfBMDMSCCC H3K4me3 58  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.5267 Pcnt=91)    Data format 
     HUES48 H3K4me3 Row-1714  HUES48 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.338 Pcnt=57)    Data format 
     MSCDACC H3K4me3 92  Mesenchymal Stem Cell Derived Adipocyte Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.5242 Pcnt=89)    Data format 
     BAC H3K4me3 149  Brain Anterior Caudate H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.4014 Pcnt=70)    Data format 
     CD4N H3K4me3 101  CD4 Naive Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1556 Pcnt=13)    Data format 
     DSM H3K4me3 160  Duodenum Smooth Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1923 Pcnt=24)    Data format 
     iPS20b H3K4me3 353  iPS-20b H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.5896 Pcnt=96)    Data format 
     CD4+CD25- H3K4me3 62  CD4+ CD25- CD45RA+ Naive Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2919 Pcnt=44)    Data format 
     CSM H3K4me3 83  Colon Smooth Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.207 Pcnt=30)    Data format 
     CD4+CD25- H3K4me3 62  CD4+ CD25- CD45RO+ Memory Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1967 Pcnt=26)    Data format 
     CD4+CD25- H3K4me3 62  CD4+ CD25- Th Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.4957 Pcnt=83)    Data format 
     SSM H3K4me3 161  Stomach Smooth Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2695 Pcnt=39)    Data format 
     CD8N H3K4me3 101  CD8 Naive Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2473 Pcnt=37)    Data format 
     BSN H3K4me3 149  Brain Substantia Nigra H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2407 Pcnt=33)    Data format 
     CD8N H3K4me3 100  CD8 Naive Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2022 Pcnt=28)    Data format 
     CD4M H3K4me3 101  CD4 Memory Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2395 Pcnt=31)    Data format 
     CD8M H3K4me3 101  CD8 Memory Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1597 Pcnt=15)    Data format 
     SM H3K4me3 157  Stomach Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1282 Pcnt=7)    Data format 
     CD4+CD25- H3K4me3 62  CD4+ CD25+ CD127- Treg Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.5576 Pcnt=93)    Data format 
     CD4N H3K4me3 100  CD4 Naive Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2442 Pcnt=35)    Data format 
     CD4M H3K4me3 100  CD4 Memory Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0994 Pcnt=4)    Data format 
     BAG H3K4me3 149  Brain Angular Gyrus H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2986 Pcnt=48)    Data format 
     CD8M H3K4me3 100  CD8 Memory Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1454 Pcnt=11)    Data format 
     hDCECC H3K4me3 247  hESC Derived CD184+ Endoderm Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3842 Pcnt=69)    Data format 
     CD4+CD25- H3K4me3 62  CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.19 Pcnt=22)    Data format 
     BITL H3K4me3 149  Brain Inferior Temporal Lobe H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3465 Pcnt=59)    Data format 
     AK H3K4me3 153  Adult Kidney H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3255 Pcnt=54)    Data format 
     BHM H3K4me3 149  Brain Hippocampus Middle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2914 Pcnt=43)    Data format 
     iPS18a H3K4me3 345  iPS-18a H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.4694 Pcnt=78)    Data format 
     BCG H3K4me3 49 18  BI Brain Cingulate Gyrus Histone H3K4me3 Donor 149 Library DNA_Lib 618 EA Release 6    Data format 
     BHM H3K4me3 50 83  BI Brain Hippocampus Middle Histone H3K4me3 Donor 150 Library DNA_Lib 983 EA Release 6    Data format 
     BMFL H3K4me3 49 11  BI Brain Mid Frontal Lobe Histone H3K4me3 Donor 149 Library DNA_Lib 611 EA Release 6    Data format 
     CCCTmem H3K4me3 62 35  BI CD4+ CD25int CD127+ Tmem Primary Cells Histone H3K4me3 Donor 62 Library DNA_Lib 735 EA Release 6    Data format 
     CM H3K4me3 55 66  BI Colonic Mucosa Histone H3K4me3 Donor 155 Library DNA_Lib 366 EA Release 6    Data format 
     CSM H3K4me3 56 25  BI Colon Smooth Muscle Histone H3K4me3 Donor 156 Library DNA_Lib 925 EA Release 6    Data format 
     DM H3K4me3 59 74  BI Duodenum Mucosa Histone H3K4me3 Donor 159 Library DNA_Lib 374 EA Release 6    Data format 
     DSM H3K4me3 74 90  BI Duodenum Smooth Muscle Histone H3K4me3 Donor 174 REMC 28 Library DNA_Lib 990 EA Release 6    Data format 
     H1 H3K4me3 67  H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6969 Pcnt=93 Library:SAK67)    Data format 
     IMR90 H3K4me3 21  IMR90 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.8482 Pcnt=100 Library:LL221)    Data format 
     IMR90 H3K4me3 03  IMR90 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.7673 Pcnt=98 Library:SK03)    Data format 
     H9 H3K4me3 01  H9 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6546 Pcnt=89 Library:SK101)    Data format 
     H1 H3K4me3 12  H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6914 Pcnt=92 Library:LL312)    Data format 
     H1 H3K4me3 27  H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6545 Pcnt=87 Library:LL227)    Data format 
     H9 H3K4me3 39  H9 H3K4me3 Signal from REMC/UCSD (Hotspot_Score=0.4015 Pcnt=48)    Data format 
     iD19.11 H3K4me3 27  iPS-DF-19.11 H3K4me3 Signal from REMC/UCSD (HOTSPOT_SCORE=0.5843 Pcnt=63)    Data format 
     iD6.9 H3K4me3 98  iPS-DF-6.9 H3K4me3 Signal from REMC/UCSD (HOTSPOT_SCORE=0.5371 Pcnt=38)    Data format 
     H1-BMP4 H3K4me3 AK135  H1-BMP4 H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.09 Pcnt=2)    Data format 
     iPS_DF_19.11 H3K4me3 SK475  iPS_DF_19.11 H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.31 Pcnt=52)    Data format 
     iPS_DF_6.9 H3K4me3 SK471  iPS_DF_6.9 H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.14 Pcnt=9)    Data format 
     H1-BMP4 H3K4me3 AK165  H1-BMP4 H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.12 Pcnt=6)    Data format 
     H1-BMP4 H3K4me3 LH2  H1-BMP4 H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.28 Pcnt=41)    Data format 
     H1-BMP4 H3K4me3 LH6  H1-BMP4 H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.35 Pcnt=61)    Data format 
     H1DMSC H3K4me3 SK463  H1DMSC H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.37 Pcnt=65)    Data format 
     H1DMSC H3K4me3 SK467  H1DMSC H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.49 Pcnt=81)    Data format 
     H1DNPCC H3K4me3 LH12  H1DNPCC H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.17 Pcnt=19)    Data format 
     H1DNPCC H3K4me3 AK199  H1DNPCC H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.18 Pcnt=20)    Data format 
     HDNP H3K4me3 43  UCSD H1 Derived Neuronal Progenitor Cultured Cells Histone H3K4me3 Library AK243 EA Release 6    Data format 
     H1 H3K4me3 A  H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.5868 Pcnt=82 DonorID:NA)    Data format 
     BMC H3K4me3 66  Breast_Myoepithelial_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3786 Pcnt=48 DonorID:RM066)    Data format 
     Bv H3K4me3 35 15  Breast_vHMEC H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.5139 Pcnt=72 DonorID:RM035)    Data format 
     H1 H3K4me3 C  H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.7097 Pcnt=95 DonorID:NA)    Data format 
     CD8N H3K4me3 01  CD8_Naive_Primary_Cells Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2562 Pcnt=20 DonorID:TC001)    Data format 
     CD8N H3K4me3 10  CD8_Naive_Primary_Cells Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2599 Pcnt=21 DonorID:TC010)    Data format 
     FB H3K4me3 T  Fetal Brain H3K4me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.4014 Pcnt=44)    Data format 
     PFK H3K4me3 01  Penis Foreskin Keratinocyte Primary Cells H3K4me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.7346 Pcnt=100)    Data format 
     BGM H3K4me3 01  Brain Germinal Matrix H3K4me3 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.4777 Pcnt=25)    Data format 
     BMC H3K4me3 80  Breast Myoepithelial Cells H3K4me3 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.6615 Pcnt=75)    Data format 
     NCD H3K4me3 02  Neurosphere Cultured Cells Cortex Derived H3K4me3 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.5814 Pcnt=50)    Data format 
     NGED H3K4me3 02  Neurosphere Cultured Cells Ganglionic Eminence Derived H3K4me3 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.6889 Pcnt=88)    Data format 
     FB H3K4me3 HuFNSC02  Fetal Brain H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.3834 Pcnt=67)    Data format 
     BGM H3K4me3 HuFGM02  Brain Germinal Matrix H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.5831 Pcnt=94)    Data format 
     FB H3K4me3 HuFNSC01  Fetal Brain H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.6203 Pcnt=98)    Data format 
     PFF H3K4me3 01 90  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K4me3 Donor skin01 Library A08390 EA Release 6    Data format 
     PFK H3K4me3 01 18  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells Histone H3K4me3 Donor skin01 Library A05018 EA Release 6    Data format 
     PFF H3K4me3 02 96  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K4me3 Donor skin02 Library A08396 EA Release 7    Data format 
     PFK H3K4me3 02 21  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells Histone H3K4me3 Donor skin02 Library A11921 EA Release 7    Data format 
     PFM H3K4me3 01 84  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells Histone H3K4me3 Donor skin01 Library A08384 EA Release 7    Data format 
     PFM H3K4me3 02 44  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells Histone H3K4me3 Donor skin02 Library A08744 EA Release 7    Data format 
     CCIPsMpT H3K4me3 62 12  BI CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells Histone H3K4me3 Donor 62 Library DNA_Lib 712 EA Release 8    Data format 
     hDCE H3K4me3 41  BI hESC Derived CD184+ Endoderm Cultured Cells Histone H3K4me3 Library DNA_Lib 241 EA Release 8    Data format 
     hDCM H3K4me3 73  BI hESC Derived CD56+ Mesoderm Cultured Cells Histone H3K4me3 Library DNA_Lib 1273 EA Release 8    Data format 
     hDCM H3K4me3 79  BI hESC Derived CD56+ Mesoderm Cultured Cells Histone H3K4me3 Library DNA_Lib 1279 EA Release 8    Data format 
     Esophagus H3K4me3 03 82  UCSD Esophagus Histone H3K4me3 Donor STL003 Library AY182 EA Release 8    Data format 
     Gastric H3K4me3 03 86  UCSD Gastric Histone H3K4me3 Donor STL003 Library AY186 EA Release 8    Data format 
     HBDT H3K4me3 65  UCSD H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K4me3 Library AY65 EA Release 8    Data format 
     LV H3K4me3 01 37  UCSD Left Ventricle Histone H3K4me3 Donor STL001 Library AK337 EA Release 8    Data format 
     LV H3K4me3 03 36  UCSD Left Ventricle Histone H3K4me3 Donor STL003 Library AY136 EA Release 8    Data format 
     Lung H3K4me3 02 33  UCSD Lung Histone H3K4me3 Donor STL002 Library AY133 EA Release 8    Data format 
     Pancreas H3K4me3 03 90  UCSD Pancreas Histone H3K4me3 Donor STL003 Library AK190 EA Release 8    Data format 
     SI H3K4me3 03 29  UCSD Small Intestine Histone H3K4me3 Donor STL003 Library AK329 EA Release 8    Data format 
     Spleen H3K4me3 03 94  UCSD Spleen Histone H3K4me3 Donor STL003 Library AY194 EA Release 8    Data format 
     PFF H3K4me3 03 66  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K4me3 Donor skin03 Library A15566 EA Release 8    Data format 
     PFK H3K4me3 03 73  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells Histone H3K4me3 Donor skin03 Library A15573 EA Release 8    Data format 
     PFM H3K4me3 03 80  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells Histone H3K4me3 Donor skin03 Library A15580 EA Release 8    Data format 
     UCSF4star H3K4me3 70  UCSF-UBC-USC UCSF-4star Cell Line Histone H3K4me3 Library A14670 EA Release 8    Data format 
     HDNP H3K4me3 26  UCSD H1 Derived Neuronal Progenitor Cultured Cells Histone H3K4me3 Library CY26 EA Release 9    Data format 
     SC H3K4me3 01 33  UCSD Sigmoid Colon Histone H3K4me3 Donor STL001 Library AK333 EA Release 9    Data format 
     NGED H3K4me3 04 04  UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived Histone H3K4me3 Donor HuFNSC04 Library A19304 EA Release 9    Data format 
     UCSF4* H3K4me3 97  UCSF-UBC-USC UCSF-4* Cell Line Histone H3K4me3 Library A19297 EA Release 9    Data format 
     PI H3K4me3 73 78  UCSF-UBC-USC Pancreatic Islets Histone H3K4me3 Donor ZD4 273 Library A19678 EA Release 9    Data format 
     PI H3K4me3 13 69  UCSF-UBC-USC Pancreatic Islets Histone H3K4me3 Donor ZGI 213 Library A22469 EA Release 9    Data format 
     BF H3K4me3 71 41  UCSF-UBC-USC Breast Fibroblast Primary Cells Histone H3K4me3 Donor RM071 Library A21641 EA Release 9    Data format 
     PBM H3K4me3 15 27  UCSF-UBC-USC Peripheral Blood Mononuclear Primary Cells Histone H3K4me3 Donor TC015 Library A21627 EA Release 9    Data format 
     PBM H3K4me3 16 34  UCSF-UBC-USC Peripheral Blood Mononuclear Primary Cells Histone H3K4me3 Donor TC016 Library A21634 EA Release 9    Data format 
     PCS H3K4me3 02 11  UCSF-UBC-USC Placenta Chorion Smooth Histone H3K4me3 Donor CTL02 Library A21711 EA Release 9    Data format 
     PA H3K4me3 02 18  UCSF-UBC-USC Placenta Amnion Histone H3K4me3 Donor CTL02 Library A21718 EA Release 9    Data format 
     hDCEcto H3K4me3 10  BI hESC Derived CD56+ Ectoderm Cultured Cells Histone H3K4me3 Library DNA_Lib 1810 EA Release 9    Data format 
     HDNP H3K4me3 e3  BI H9 Derived Neuronal Progenitor Cultured Cells Histone H3K4me3 Library Lib:RI:20101012:08--ChIP:MA:20100927:08:hNP (ES H9 derived Nuronal Progenitors):H3K4Me3 EA Release 9    Data format 
     HDN H3K4me3 89  BI H9 Derived Neuron Cultured Cells Histone H3K4me3 Library Lib EpiLabSPL Row 1689 EA Release 9    Data format 
     hDCEcto H3K4me3 73  BI hESC Derived CD56+ Ectoderm Cultured Cells Histone H3K4me3 Library DNA_Lib 2073 EA Release 9    Data format 
     CCIPsT H3K4me3 32 14  BI CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells Histone H3K4me3 Donor 332 Library DNA_Lib 2214 EA Release 9    Data format 
     CCIPsMpT H3K4me3 32 58  BI CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells Histone H3K4me3 Donor 332 Library DNA_Lib 2258 EA Release 9    Data format 
     CCCMM H3K4me3 32 96  BI CD4+ CD25- CD45RO+ Memory Primary Cells Histone H3K4me3 Donor 332 Library DNA_Lib 2096 EA Release 9    Data format 
     CCT H3K4me3 32 70  BI CD4+ CD25- Th Primary Cells Histone H3K4me3 Donor 332 Library DNA_Lib 2270 EA Release 9    Data format 
     CCCTreg H3K4me3 32 89  BI CD4+ CD25+ CD127- Treg Primary Cells Histone H3K4me3 Donor 332 Library DNA_Lib 2089 EA Release 9    Data format 
     CCCNN H3K4me3 32 08  BI CD4+ CD25- CD45RA+ Naive Primary Cells Histone H3K4me3 Donor 332 Library DNA_Lib 2208 EA Release 9    Data format 
     CCCTmem H3K4me3 32 64  BI CD4+ CD25int CD127+ Tmem Primary Cells Histone H3K4me3 Donor 332 Library DNA_Lib 2264 EA Release 9    Data format 
     FT H3K4me3 44 39  UW Fetal Thymus Histone H3K4me3 Donor H-24644 Library Histone.DS21539 EA Release 9    Data format 
     CD19 H3K4me3 01 11  UW CD19 Primary Cells Histone H3K4me3 Donor RO 01701 Library Histone.DS21711 EA Release 9    Data format 
     CD56 H3K4me3 01 15  UW CD56 Primary Cells Histone H3K4me3 Donor RO 01701 Library Histone.DS21715 EA Release 9    Data format 
     FIL H3K4me3 95 30  UW Fetal Intestine Large Histone H3K4me3 Donor H-24595 Library Histone.DS21530 EA Release 9    Data format 
     FIS H3K4me3 95 33  UW Fetal Intestine Small Histone H3K4me3 Donor H-24595 Library Histone.DS21533 EA Release 9    Data format 
     FML H3K4me3 44 36  UW Fetal Muscle Leg Histone H3K4me3 Donor H-24644 Library Histone.DS21536 EA Release 9    Data format 
     CD3 H3K4me3 01 03  UW CD3 Primary Cells Histone H3K4me3 Donor RO 01701 Library Histone.DS21703 EA Release 9    Data format 
     CD14 H3K4me3 01 07  UW CD14 Primary Cells Histone H3K4me3 Donor RO 01701 Library Histone.DS21707 EA Release 9    Data format 
     CD4 H3K4me3 79 76  UW CD4 Primary Cells Histone H3K4me3 Donor RO 01679 Library Histone.DS21776 EA Release 9    Data format 
     CD8 H3K4me3 79 78  UW CD8 Primary Cells Histone H3K4me3 Donor RO 01679 Library Histone.DS21778 EA Release 9    Data format 
     FS H3K4me3 39 98  UW Fetal Stomach Histone H3K4me3 Donor H-24639 Library Histone.DS22598 EA Release 9    Data format 
     FAG H3K4me3 00 63  UW Fetal Adrenal Gland Histone H3K4me3 Donor H-24800 Library Histone.DS23063 EA Release 9    Data format 
     FP H3K4me3 96 00  UW Fetal Placenta Histone H3K4me3 Donor H-24996 Library Histone.DS23300 EA Release 9    Data format 
     FMT H3K4me3 51 02  UW Fetal Muscle Trunk Histone H3K4me3 Donor H-24851 Library Histone.DS23302 EA Release 9    Data format 
    
Assembly: Human Feb. 2009 (GRCh37/hg19)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

These tracks are genome-wide maps on epigenetic marks surveyed by Roadmap Epigenomics Project. Each track is about one type of epigenetic mark, and contains multiple experiments assayed for that mark type. DNA methylation and histone modification are two types of most important epigenetic marks.

DNA methylation of human DNA mostly happens on cytosine bases of CpG dinucleotides. The methylated DNA usually prevent accessibility of regulatory proteins and hampers transcription, while unmethylated DNA is usually indicative of open chromatin. The MeDIP-Seq and MRE-Seq experiments are usually performed on same sample to identify genome-wide DNA methylation pattern. MeDIP-Seq (methylated DNA immunoprecipitation and sequencing) is a ChIP-based approach utilizing antibody against methylated cytosine. This method enriches methylated DNA and high read count indicates high likelihood of underlying region is methylated. The MRE-Seq (methylation restriction enzyme sequencing) uses methylation-sensitive restriction enzymes to digest DNA, and only cut at unmethylated restriction sites. The cut restriction sites will be detected by sequencing where reads aligned to a restriction site on reference genome means the restriction site is unmethylated.

The MethylC-Seq (MethylC sequencing) uses bisulfite to convert methylated cytosines to thymines before sequencing. The percentage of reads with a T versus a C indicates the percentage methylation at the cytosine. Details can be found in this paper Lister R, et al., Nature. 2009 Nov 19;462(7271):315-22. .

RRBS (Reduced-Representation-Bisulfite-Sequencing) is similar to MethylC-seq except RRBS uses restriction enzyme to fragment the genome into fragments suitably-sized for sequencing. While RRBS produces percent methylation similar to MethylC-seq, it is limited to cytosines that are within restriction fragments of a suitable size and then tend to measure CpG dense regions only. Details can be found in this paper: Meissener, A. et al., Nucleic Acids Res. 2005; 33(18): 5868-5877. .

Histone marks are critical epigenetic components. They are covalent modifications of amino acid residues of histone proteins, which modify protein's biochemical property and affect transcription and chromatin state. The histone marks are measured by ChIP-Seq experiments (chromatin immunoprecipitation followed by sequencing).

Display conventions

Each track can be turned on/off individually. Inside each track, sub-tracks are displayed in same vertical space and are overlayed with transparent colors for contrast. All tracks displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. Sub-tracks sharing same space use same scale.

Methods

Experimental protocols: follow this link for experimental protocols.

Data processing: EDACC carried out data processing and quality assessment. Details are fully explained here . In brief, sequencing reads were aligned with 'Pash' program to derive read density data. The read density data is prepared into 'wiggle' format files with fixed step length of 20 bp. Data in wiggle and other formats have been deposited in NCBI Gene Expression Omnibus database for public access.

Quality control: the HotSpot was one of the methods used to assess quality of ChIP-Seq experiments. The long track name includes a "Hotspot_Score" field indicates the percentage of sequencing reads found inside hotspot regions. The "Pcnt" field shows the percentile of current experiment score in this type of ChIP-Seq experiments (e.g., all H3K4me3 ChIP-Seq experiments). This value is subject to change in next Data Release. The most comprehensive and up-to-date description on QC Metrics used by the consortium can be found here .

Release Notes

The data is combination of Release II, III, IV, V, VI, VII, VIII and IX which were mapped to human reference genome version hg19. The data is production of Roadmap Epigenomics Project.

Please follow the link for Roadmap Epigenomics data access policy

Credits

These data were generated in labs from participating institutions of Roadmap Epigenomics Project.

Useful links