Affy Archive Affy U133 Track Settings
 
Alignments of Affymetrix Consensus/Exemplars from HG-U133

Track collection: Affymetrix Archive

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Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query


Display data as a density graph:

Display data as a rearrangement graph:
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)
Data last updated at UCSC: 2015-01-08

Description

This track shows the location of the consensus and exemplar sequences used for the selection of probes on the Affymetrix HG-U133A and HG-U133B chips.

Methods

Consensus and exemplar sequences were downloaded from the Affymetrix Product Support and mapped to the genome using blat followed by pslReps with the parameters: 

   -minCover=0.5 -minAli=0.97 -nearTop=0.005

Credits

Thanks to Affymetrix for the data underlying this track.