Assay Summary H3K4me1 Summary Track Settings
 
Roadmap Epigenome H3K4me1 Summary for 126 sample type(s)

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     PI H3K4me1 27  Pancreatic Islets H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3816 Pcnt=56 DonorID:pancreaticisletsnormal_3/27/09)    Data format 
     CD34 H3K4me1 89  CD34 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5216 Pcnt=81 DonorID:CD34_39889)    Data format 
     ESI3 H3K4me1 82  ES-I3 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4313 Pcnt=70 Library:Solexa-15382)    Data format 
     AL H3K4me1 5  Adult Liver H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3989 Pcnt=60 DonorID:5)    Data format 
     H1 H3K4me1 61  H1 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2723 Pcnt=19 Library:Solexa-13061)    Data format 
     DM H3K4me1 61  Duodenum Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2163 Pcnt=16 DonorID:61)    Data format 
     SM H3K4me1 62  Skeletal Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.363 Pcnt=44 DonorID:62)    Data format 
     MCD34 H3K4me1 28  Mobilized_CD34_Primary_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5335 Pcnt=86 DonorID:RO01508)    Data format 
     MS H3K4me1 1  Muscle Satellite Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.512 Pcnt=79 DonorID:NA)    Data format 
     ADMSC H3K4me1 1  Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6144 Pcnt=98 DonorID:1)    Data format 
     CD3 H3K4me1 40  CD3 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4907 Pcnt=77 DonorID:CD3_39840)    Data format 
     ESWA7 H3K4me1 11  ES-WA7 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4247 Pcnt=67 Library:Solexa-12611)    Data format 
     AN H3K4me1 7  Adipose Nuclei H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0885 Pcnt=2 DonorID:7)    Data format 
     RM H3K4me1 29  Rectal Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1858 Pcnt=9 DonorID:29)    Data format 
     SM H3K4me1 63  Skeletal Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3679 Pcnt=47 DonorID:63)    Data format 
     CD34 H3K4me1 20  CD34 Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4056 Pcnt=63 DonorID:culturedCD34_2/20/09)    Data format 
     MS H3K4me1 2  Muscle Satellite Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5688 Pcnt=91 DonorID:NA)    Data format 
     BMDMSC H3K4me1 57  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6001 Pcnt=95 DonorID:57)    Data format 
     MS H3K4me1 3  Muscle Satellite Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5267 Pcnt=84 DonorID:NA)    Data format 
     H1 H3K4me1 29  H1 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2785 Pcnt=21 Library:Solexa-10529)    Data format 
     RM H3K4me1 31  Rectal Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2865 Pcnt=23 DonorID:31)    Data format 
     FL H3K4me1 27  Fetal Lung H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2044 Pcnt=14 DonorID:H-22727)    Data format 
     MCD34 H3K4me1 49  Mobilized_CD34_Primary_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4797 Pcnt=74 DonorID:RO01549)    Data format 
     SM H3K4me1 19  Skeletal Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4091 Pcnt=65 DonorID:19)    Data format 
     AL H3K4me1 3.0  Adult Liver H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4319 Pcnt=72 DonorID:3.0)    Data format 
     SSM H3K4me1 28  Stomach Smooth Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.354 Pcnt=40 DonorID:28)    Data format 
     FK H3K4me1 76  Fetal Kidney H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1268 Pcnt=5 DonorID:H-22676)    Data format 
     CM H3K4me1 32  Colonic Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.31 Pcnt=30 DonorID:32)    Data format 
     CD3 H3K4me1 11  CD3 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3765 Pcnt=49 DonorID:CD3_39811)    Data format 
     CD34 H3K4me1 11  CD34 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3781 Pcnt=53 DonorID:CD34_39811)    Data format 
     AN H3K4me1 92  Adipose Nuclei H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.4587 Pcnt=68)    Data format 
     AN H3K4me1 93  Adipose Nuclei H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.474 Pcnt=75)    Data format 
     AN H3K4me1 94  Adipose Nuclei H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.5409 Pcnt=82)    Data format 
     AK H3K4me1 27  Adult Kidney H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.203 Pcnt=18)    Data format 
     AL H3K4me1 4  Adult Liver H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.4334 Pcnt=64)    Data format 
     BMDMSC H3K4me1 58  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.5693 Pcnt=89)    Data format 
     BMDMSC H3K4me1 59  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3279 Pcnt=36)    Data format 
     BMDMSC H3K4me1 60  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3071 Pcnt=32)    Data format 
     BAC H3K4me1 12  Brain Anterior Caudate H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.1892 Pcnt=7)    Data format 
     BCG H3K4me1 12  Brain Cingulate Gyrus H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.2017 Pcnt=14)    Data format 
     BHM H3K4me1 12  Brain Hippocampus Middle H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.2108 Pcnt=21)    Data format 
     BITL H3K4me1 12  Brain Inferior Temporal Lobe H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.234 Pcnt=29)    Data format 
     BMFL H3K4me1 12  Brain Mid Frontal Lobe H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.1575 Pcnt=4)    Data format 
     BSN H3K4me1 12  Brain Substantia Nigra H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.2177 Pcnt=25)    Data format 
     CD34 H3K4me1 23  CD34 Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.421 Pcnt=57)    Data format 
     CfBMDMSC H3K4me1 57  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.6298 Pcnt=100)    Data format 
     CfBMDMSC H3K4me1 58  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.5252 Pcnt=79)    Data format 
     CfBMDMSC H3K4me1 59  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.6161 Pcnt=96)    Data format 
     CfBMDMSC H3K4me1 60  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.5556 Pcnt=86)    Data format 
     FL H3K4me1 66  Fetal Lung H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.4642 Pcnt=71)    Data format 
     HUES48 H3K4me1 e1  HUES48 H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3364 Pcnt=39)    Data format 
     HUES64 H3K4me1 e1  HUES64 H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3525 Pcnt=43)    Data format 
     HUES6 H3K4me1  HUES6 H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3758 Pcnt=46)    Data format 
     HUES6 H3K4me1  HUES6 H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.4317 Pcnt=61)    Data format 
     RM H3K4me1 30  Rectal Smooth Muscle H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.2008 Pcnt=11)    Data format 
     MCD34 H3K4me1 RO01480  MCD34 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     MCD34 H3K4me1 RO01536  MCD34 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     MCD34 H3K4me1 RO01562  MCD34 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     FL H3K4me1 H22772  Fetal Lung H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     FB H3K4me1 76  Fetal Brain H3K4me1 Signal from REMC/Broad (HOTSPOT_SCORE=0.4809 Pcnt=69)    Data format 
     FH H3K4me1 24  Fetal Heart H3K4me1 Signal from REMC/Broad (HOTSPOT_SCORE=0.441 Pcnt=54)    Data format 
     FH H3K4me1 14  Fetal Heart H3K4me1 Signal from REMC/Broad (HOTSPOT_SCORE=0.492 Pcnt=77)    Data format 
     FL H3K4me1 72  Fetal Lung H3K4me1 Signal from REMC/Broad (HOTSPOT_SCORE=0.4224 Pcnt=46)    Data format 
     MCD34 H3K4me1 80  Mobilized CD34 Primary Cells H3K4me1 Signal from REMC/Broad (HOTSPOT_SCORE=0.6132 Pcnt=85)    Data format 
     MCD34 H3K4me1 36  Mobilized CD34 Primary Cells H3K4me1 Signal from REMC/Broad (HOTSPOT_SCORE=0.6316 Pcnt=92)    Data format 
     MCD34 H3K4me1 62  Mobilized CD34 Primary Cells H3K4me1 Signal from REMC/Broad (HOTSPOT_SCORE=0.6649 Pcnt=100)    Data format 
     MCD34 H3K4me1 RO_01536  Mobilized CD34 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.6316 Pcnt=92)    Data format 
     MSCDACC H3K4me1 93  Mesenchymal Stem Cell Derived Adipocyte Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.4149 Pcnt=78)    Data format 
     ADMSCCC H3K4me1 92  Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.5938 Pcnt=98)    Data format 
     AN H3K4me1 95  Adipose Nuclei H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.5675 Pcnt=96)    Data format 
     ADMSCCC H3K4me1 93  Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.5443 Pcnt=94)    Data format 
     iPS15b H3K4me1  iPS-15b H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3174 Pcnt=43)    Data format 
     BAG H3K4me1 112  Brain Angular Gyrus H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.175 Pcnt=9)    Data format 
     ESI3 H3K4me1  ES-I3 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3286 Pcnt=54)    Data format 
     HUES48 H3K4me1 Row-1713  HUES48 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3374 Pcnt=63)    Data format 
     HUES64 H3K4me1 Row-1719  HUES64 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3407 Pcnt=65)    Data format 
     iPS20b H3K4me1  iPS-20b H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1587 Pcnt=7)    Data format 
     MSCDACC H3K4me1 92  Mesenchymal Stem Cell Derived Adipocyte Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.5323 Pcnt=93)    Data format 
     BAC H3K4me1 149  Brain Anterior Caudate H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3027 Pcnt=37)    Data format 
     DSM H3K4me1 160  Duodenum Smooth Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0962 Pcnt=4)    Data format 
     iPS20b H3K4me1 354  iPS-20b H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.388 Pcnt=72)    Data format 
     CD4+CD25- H3K4me1 62  CD4+ CD25- Th Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.4981 Pcnt=89)    Data format 
     CD8N H3K4me1 100  CD8 Naive Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3017 Pcnt=35)    Data format 
     CD4N H3K4me1 101  CD4 Naive Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3245 Pcnt=48)    Data format 
     CD4N H3K4me1 100  CD4 Naive Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3304 Pcnt=57)    Data format 
     CD8M H3K4me1 100  CD8 Memory Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3231 Pcnt=46)    Data format 
     CD4M H3K4me1 100  CD4 Memory Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.4449 Pcnt=83)    Data format 
     BSN H3K4me1 149  Brain Substantia Nigra H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3165 Pcnt=41)    Data format 
     CD4+CD25- H3K4me1 62  CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.4297 Pcnt=81)    Data format 
     SM H3K4me1 157  Stomach Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3063 Pcnt=39)    Data format 
     CD4M H3K4me1 101  CD4 Memory Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.297 Pcnt=31)    Data format 
     CD4+CD25- H3K4me1 62  CD4+ CD25- CD45RO+ Memory Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.4179 Pcnt=80)    Data format 
     CD8M H3K4me1 101  CD8 Memory Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2544 Pcnt=20)    Data format 
     BAG H3K4me1 149  Brain Angular Gyrus H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2356 Pcnt=19)    Data format 
     hDCECC H3K4me1 249  hESC Derived CD184+ Endoderm Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3864 Pcnt=70)    Data format 
     CSM H3K4me1 83  Colon Smooth Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2555 Pcnt=22)    Data format 
     CD4+CD25- H3K4me1 62  CD4+ CD25+ CD127- Treg Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3446 Pcnt=67)    Data format 
     CD4+CD25- H3K4me1 62  CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3248 Pcnt=50)    Data format 
     BITL H3K4me1 149  Brain Inferior Temporal Lobe H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.282 Pcnt=28)    Data format 
     AK H3K4me1 153  Adult Kidney H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.2048 Pcnt=13)    Data format 
     BHM H3K4me1 149  Brain Hippocampus Middle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3352 Pcnt=59)    Data format 
     iPS18a H3K4me1 346  iPS-18a H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.328 Pcnt=52)    Data format 
     CD8N H3K4me1 101  CD8 Naive Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.3301 Pcnt=56)    Data format 
     CD15 H3K4me1 23  CD15 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.5141 Pcnt=91)    Data format 
     BCG H3K4me1 49 19  BI Brain Cingulate Gyrus Histone H3K4me1 Donor 149 Library DNA_Lib 619 EA Release 6    Data format 
     BHM H3K4me1 50 80  BI Brain Hippocampus Middle Histone H3K4me1 Donor 150 Library DNA_Lib 980 EA Release 6    Data format 
     BMFL H3K4me1 49 13  BI Brain Mid Frontal Lobe Histone H3K4me1 Donor 149 Library DNA_Lib 613 EA Release 6    Data format 
     CCCN H3K4me1 62 27  BI CD4+ CD25- CD45RA+ Naive Primary Cells Histone H3K4me1 Donor 62 Library DNA_Lib 727 EA Release 6    Data format 
     CCCTmem H3K4me1 62 36  BI CD4+ CD25int CD127+ Tmem Primary Cells Histone H3K4me1 Donor 62 Library DNA_Lib 736 EA Release 6    Data format 
     CM H3K4me1 55 63  BI Colonic Mucosa Histone H3K4me1 Donor 155 Library DNA_Lib 363 EA Release 6    Data format 
     DM H3K4me1 59 70  BI Duodenum Mucosa Histone H3K4me1 Donor 159 Library DNA_Lib 370 EA Release 6    Data format 
     DSM H3K4me1 74 88  BI Duodenum Smooth Muscle Histone H3K4me1 Donor 174 REMC 28 Library DNA_Lib 988 EA Release 6    Data format 
     IMR90 H3K4me1 33  IMR90 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6392 Pcnt=100 Library:SYL133)    Data format 
     H1 H3K4me1 28  H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1997 Pcnt=12 Library:LL228)    Data format 
     H1 H3K4me1 11  H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.34 Pcnt=33 Library:LL311)    Data format 
     IMR90 H3K4me1 04  IMR90 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5718 Pcnt=93 Library:SK04)    Data format 
     IMR90 H3K4me1 22  IMR90 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5529 Pcnt=88 Library:LL222)    Data format 
     H1 H3K4me1 31  H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3905 Pcnt=58 Library:YL131)    Data format 
     H9 H3K4me1 23  H9 H3K4me1 Signal from REMC/UCSD (Hotspot_Score=0.3782 Pcnt=50)    Data format 
     H9 H3K4me1 41  H9 Cell Line H3K4me1 Signal from REMC/UCSD (HOTSPOT_SCORE=0.0886 Pcnt=8)    Data format 
     iD19.11 H3K4me1 01  iPS-DF-19.11 H3K4me1 Signal from REMC/UCSD (HOTSPOT_SCORE=0.3031 Pcnt=31)    Data format 
     iD6.9 H3K4me1 97  iPS-DF-6.9 H3K4me1 Signal from REMC/UCSD (HOTSPOT_SCORE=0.2169 Pcnt=23)    Data format 
     H1-BMP4 H3K4me1 AK133  H1-BMP4 H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.09 Pcnt=2)    Data format 
     H1-BMP4 H3K4me1 AK163  H1-BMP4 H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.32 Pcnt=44)    Data format 
     iPS_DF_19.11 H3K4me1 SK473  iPS_DF_19.11 H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.29 Pcnt=30)    Data format 
     iPS_DF_6.9 H3K4me1 SK469  iPS_DF_6.9 H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.26 Pcnt=24)    Data format 
     H1-BMP4 H3K4me1 LH1  H1-BMP4 H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.27 Pcnt=26)    Data format 
     H1-BMP4 H3K4me1 LH5  H1-BMP4 H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.4 Pcnt=74)    Data format 
     H1DMSC H3K4me1 SK461  H1DMSC H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.36 Pcnt=69)    Data format 
     H1DMSC H3K4me1 SK465  H1DMSC H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.49 Pcnt=87)    Data format 
     HDNP H3K4me1 98  UCSD H1 Derived Neuronal Progenitor Cultured Cells Histone H3K4me1 Library AK198 EA Release 6    Data format 
     HDNP H3K4me1 42  UCSD H1 Derived Neuronal Progenitor Cultured Cells Histone H3K4me1 Library AK242 EA Release 6    Data format 
     Bv H3K4me1 35 18  Breast_vHMEC H3K4me1HS2618 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3533 Pcnt=37 DonorID:RM035)    Data format 
     BMC H3K4me1 80  Breast_Myoepithelial_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3773 Pcnt=51 DonorID:RM080)    Data format 
     PBM H3K4me1 12 45  Peripheral_Blood_Mononuclear_Primary_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1534 Pcnt=7 DonorID:TC012)    Data format 
     Bv H3K4me1 35 94  Breast_vHMEC H3K4me1HS1994 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2869 Pcnt=26 DonorID:RM035)    Data format 
     CD8N H3K4me1 01  CD8_Naive_Primary_Cells Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3514 Pcnt=35 DonorID:TC001)    Data format 
     H1 H3K4me1 D  H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3605 Pcnt=42 DonorID:NA)    Data format 
     BMC H3K4me1 66  Breast_Myoepithelial_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2918 Pcnt=28 DonorID:RM066)    Data format 
     BLEC H3K4me1 80  Breast Luminal Epithelial Cells H3K4me1 Signal from REMC/UCSF-UBC (Hotspot_Score=0.4115 Pcnt=54)    Data format 
     PFK H3K4me1 01  Penis Foreskin Keratinocyte Primary Cells H3K4me1 Signal from REMC/UCSF-UBC (Hotspot_Score=0.5729 Pcnt=93)    Data format 
     NCD H3K4me1 02  Neurosphere Cultured Cells Cortex Derived H3K4me1 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.3154 Pcnt=38)    Data format 
     NGED H3K4me1 02  Neurosphere Cultured Cells Ganglionic Eminence Derived H3K4me1 Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.1825 Pcnt=15)    Data format 
     FB H3K4me1 HuFNSC02  Fetal Brain H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.1088 Pcnt=6)    Data format 
     BGM H3K4me1 HuFGM02  Brain Germinal Matrix H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.2172 Pcnt=17)    Data format 
     FB H3K4me1 HuFNSC01  Fetal Brain H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.182 Pcnt=11)    Data format 
     BGM H3K4me1 01 50  UCSF-UBC-USC Brain Germinal Matrix Histone H3K4me1 Donor HuFGM01 Library A05150 EA Release 6    Data format 
     NCD H3K4me1 01 69  UCSF-UBC-USC Neurosphere Cultured Cells Cortex Derived Histone H3K4me1 Donor HuFNSC01 Library A03269 EA Release 6    Data format 
     NGED H3K4me1 01 75  UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived Histone H3K4me1 Donor HuFNSC01 Library A03275 EA Release 6    Data format 
     PFF H3K4me1 01 89  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K4me1 Donor skin01 Library A08389 EA Release 6    Data format 
     PFF H3K4me1 02 95  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K4me1 Donor skin02 Library A08395 EA Release 7    Data format 
     PFK H3K4me1 02 20  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells Histone H3K4me1 Donor skin02 Library A11920 EA Release 7    Data format 
     PFM H3K4me1 01 83  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells Histone H3K4me1 Donor skin01 Library A08383 EA Release 7    Data format 
     PFM H3K4me1 02 43  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells Histone H3K4me1 Donor skin02 Library A08743 EA Release 7    Data format 
     CD19 H3K4me1 30 61  BI CD19 Primary Cells Histone H3K4me1 Donor 130 Library DNA_Lib 1261 EA Release 8    Data format 
     hDCM H3K4me1 72  BI hESC Derived CD56+ Mesoderm Cultured Cells Histone H3K4me1 Library DNA_Lib 1272 EA Release 8    Data format 
     Esophagus H3K4me1 03 83  UCSD Esophagus Histone H3K4me1 Donor STL003 Library AY183 EA Release 8    Data format 
     Gastric H3K4me1 03 87  UCSD Gastric Histone H3K4me1 Donor STL003 Library AY187 EA Release 8    Data format 
     HBDT H3K4me1 64  UCSD H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K4me1 Library AY64 EA Release 8    Data format 
     LV H3K4me1 01 36  UCSD Left Ventricle Histone H3K4me1 Donor STL001 Library AK336 EA Release 8    Data format 
     LV H3K4me1 03 97  UCSD Left Ventricle Histone H3K4me1 Donor STL003 Library AY197 EA Release 8    Data format 
     Lung H3K4me1 02 98  UCSD Lung Histone H3K4me1 Donor STL002 Library AY198 EA Release 8    Data format 
     Pancreas H3K4me1 03 91  UCSD Pancreas Histone H3K4me1 Donor STL003 Library AK191 EA Release 8    Data format 
     RA H3K4me1 03 99  UCSD Right Atrium Histone H3K4me1 Donor STL003 Library AY199 EA Release 8    Data format 
     Spleen H3K4me1 03 95  UCSD Spleen Histone H3K4me1 Donor STL003 Library AY195 EA Release 8    Data format 
     PFF H3K4me1 03 65  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K4me1 Donor skin03 Library A15565 EA Release 8    Data format 
     PFK H3K4me1 03 72  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells Histone H3K4me1 Donor skin03 Library A15572 EA Release 8    Data format 
     PFM H3K4me1 03 79  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells Histone H3K4me1 Donor skin03 Library A15579 EA Release 8    Data format 
     UCSF4star H3K4me1 69  UCSF-UBC-USC UCSF-4star Cell Line Histone H3K4me1 Library A14669 EA Release 8    Data format 
     HDNP H3K4me1 25  UCSD H1 Derived Neuronal Progenitor Cultured Cells Histone H3K4me1 Library CY25 EA Release 9    Data format 
     Gastric H3K4me1 01 82  UCSD Gastric Histone H3K4me1 Donor STL001 Library CY82 EA Release 9    Data format 
     Ovary H3K4me1 02 47  UCSD Ovary Histone H3K4me1 Donor STL002 Library AY347 EA Release 9    Data format 
     Pancreas H3K4me1 02 78  UCSD Pancreas Histone H3K4me1 Donor STL002 Library CY78 EA Release 9    Data format 
     Aorta H3K4me1 03 72  UCSD Aorta Histone H3K4me1 Donor STL003 Library AY372 EA Release 9    Data format 
     Lung H3K4me1 01 66  UCSD Lung Histone H3K4me1 Donor STL001 Library CY166 EA Release 9    Data format 
     PM H3K4me1 01 05  UCSD Psoas Muscle Histone H3K4me1 Donor STL001 Library CY105 EA Release 9    Data format 
     RV H3K4me1 01 02  UCSD Right Ventricle Histone H3K4me1 Donor STL001 Library CY102 EA Release 9    Data format 
     Thymus H3K4me1 01 76  UCSD Thymus Histone H3K4me1 Donor STL001 Library AY476 EA Release 9    Data format 
     AG H3K4me1 02 99  UCSD Adrenal Gland Histone H3K4me1 Donor STL002 Library CY99 EA Release 9    Data format 
     Aorta H3K4me1 02 63  UCSD Aorta Histone H3K4me1 Donor STL002 Library CY163 EA Release 9    Data format 
     AG H3K4me1 03 74  UCSD Adrenal Gland Histone H3K4me1 Donor STL003 Library AY474 EA Release 9    Data format 
     Bladder H3K4me1 03 24  UCSD Bladder Histone H3K4me1 Donor STL003 Library CY124 EA Release 9    Data format 
     AL H3K4me1 11 27  UCSD Adult Liver Histone H3K4me1 Donor STL011 Library CY127 EA Release 9    Data format 
     Esophagus H3K4me1 02 80  UCSD Esophagus Histone H3K4me1 Donor STL002 Library CY180 EA Release 9    Data format 
     SI H3K4me1 02 13  UCSD Small Intestine Histone H3K4me1 Donor STL002 Library AY513 EA Release 9    Data format 
     Spleen H3K4me1 02 17  UCSD Spleen Histone H3K4me1 Donor STL002 Library AY517 EA Release 9    Data format 
     HBDT H3K4me1 58  UCSD H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K4me1 Library AY258 EA Release 9    Data format 
     SI H3K4me1 01 28  UCSD Small Intestine Histone H3K4me1 Donor STL001 Library AK328 EA Release 9    Data format 
     SC H3K4me1 01 32  UCSD Sigmoid Colon Histone H3K4me1 Donor STL001 Library AK332 EA Release 9    Data format 
     PM H3K4me1 03 92  UCSD Psoas Muscle Histone H3K4me1 Donor STL003 Library A292 EA Release 9    Data format 
     RV H3K4me1 03 77  UCSD Right Ventricle Histone H3K4me1 Donor STL003 Library AY277 EA Release 9    Data format 
     SC H3K4me1 03 80  UCSD Sigmoid Colon Histone H3K4me1 Donor STL003 Library AY280 EA Release 9    Data format 
     BF H3K4me1 71 40  UCSF-UBC-USC Breast Fibroblast Primary Cells Histone H3K4me1 Donor RM071 Library A21640 EA Release 9    Data format 
     NGED H3K4me1 04 03  UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived Histone H3K4me1 Donor HuFNSC04 Library A19303 EA Release 9    Data format 
     UCSF4* H3K4me1 96  UCSF-UBC-USC UCSF-4* Cell Line Histone H3K4me1 Library A19296 EA Release 9    Data format 
     PI H3K4me1 13 68  UCSF-UBC-USC Pancreatic Islets Histone H3K4me1 Donor ZGI 213 Library A22468 EA Release 9    Data format 
     PA H3K4me1 02 17  UCSF-UBC-USC Placenta Amnion Histone H3K4me1 Donor CTL02 Library A21717 EA Release 9    Data format 
     PCS H3K4me1 02 10  UCSF-UBC-USC Placenta Chorion Smooth Histone H3K4me1 Donor CTL02 Library A21710 EA Release 9    Data format 
     PBM H3K4me1 15 26  UCSF-UBC-USC Peripheral Blood Mononuclear Primary Cells Histone H3K4me1 Donor TC015 Library A21626 EA Release 9    Data format 
     hDCE H3K4me1 90  BI hESC Derived CD184+ Endoderm Cultured Cells Histone H3K4me1 Library DNA_Lib 3190 EA Release 9    Data format 
     HDN H3K4me1 e1  BI H9 Derived Neuron Cultured Cells Histone H3K4me1 Library Lib:RI:20101012:13--ChIP:MA:20100927:13:hN (ES H9 derived Neurons):H3K4Me1 EA Release 9    Data format 
     HDNP H3K4me1 e1  BI H9 Derived Neuronal Progenitor Cultured Cells Histone H3K4me1 Library Lib:RI:20101012:07--ChIP:MA:20100927:07:hNP (ES H9 derived Nuronal Progenitors):H3K4Me1 EA Release 9    Data format 
     CCIPsT H3K4me1 32 17  BI CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells Histone H3K4me1 Donor 332 Library DNA_Lib 2217 EA Release 9    Data format 
     CCCNN H3K4me1 32 11  BI CD4+ CD25- CD45RA+ Naive Primary Cells Histone H3K4me1 Donor 332 Library DNA_Lib 2211 EA Release 9    Data format 
     CCCMM H3K4me1 32 95  BI CD4+ CD25- CD45RO+ Memory Primary Cells Histone H3K4me1 Donor 332 Library DNA_Lib 2095 EA Release 9    Data format 
     CCT H3K4me1 32 73  BI CD4+ CD25- Th Primary Cells Histone H3K4me1 Donor 332 Library DNA_Lib 2273 EA Release 9    Data format 
     CCCTreg H3K4me1 32 88  BI CD4+ CD25+ CD127- Treg Primary Cells Histone H3K4me1 Donor 332 Library DNA_Lib 2088 EA Release 9    Data format 
     hDCE H3K4me1 67  BI hESC Derived CD184+ Endoderm Cultured Cells Histone H3K4me1 Library DNA_Lib 2067 EA Release 9    Data format 
     hDCEcto H3K4me1 09  BI hESC Derived CD56+ Ectoderm Cultured Cells Histone H3K4me1 Library DNA_Lib 1809 EA Release 9    Data format 
     CCCTmem H3K4me1 32 67  BI CD4+ CD25int CD127+ Tmem Primary Cells Histone H3K4me1 Donor 332 Library DNA_Lib 2267 EA Release 9    Data format 
     CCIPsMpT H3K4me1 32 61  BI CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells Histone H3K4me1 Donor 332 Library DNA_Lib 2261 EA Release 9    Data format 
     CD19 H3K4me1 79 84  UW CD19 Primary Cells Histone H3K4me1 Donor RO 01679 Library Histone.DS22584 EA Release 9    Data format 
     CD56 H3K4me1 79 93  UW CD56 Primary Cells Histone H3K4me1 Donor RO 01679 Library Histone.DS22593 EA Release 9    Data format 
     FT H3K4me1 44 01  UW Fetal Thymus Histone H3K4me1 Donor H-24644 Library Histone.DS22601 EA Release 9    Data format 
     FIL H3K4me1 95 52  UW Fetal Intestine Large Histone H3K4me1 Donor H-24595 Library Histone.DS22552 EA Release 9    Data format 
     FIS H3K4me1 95 55  UW Fetal Intestine Small Histone H3K4me1 Donor H-24595 Library Histone.DS22555 EA Release 9    Data format 
     FML H3K4me1 44 58  UW Fetal Muscle Leg Histone H3K4me1 Donor H-24644 Library Histone.DS22558 EA Release 9    Data format 
     CD3 H3K4me1 79 61  UW CD3 Primary Cells Histone H3K4me1 Donor RO 01679 Library Histone.DS22561 EA Release 9    Data format 
     CD14 H3K4me1 21 03  UW CD14 Primary Cells Histone H3K4me1 Donor RO 01721 Library Histone.DS22403 EA Release 9    Data format 
     FS H3K4me1 76 97  UW Fetal Stomach Histone H3K4me1 Donor H-24776 Library Histone.DS22597 EA Release 9    Data format 
     FP H3K4me1 96 27  UW Fetal Placenta Histone H3K4me1 Donor H-24996 Library Histone.DS23027 EA Release 9    Data format 
     FAG H3K4me1 00 65  UW Fetal Adrenal Gland Histone H3K4me1 Donor H-24800 Library Histone.DS23065 EA Release 9    Data format 
     FMT H3K4me1 51 08  UW Fetal Muscle Trunk Histone H3K4me1 Donor H-24851 Library Histone.DS23308 EA Release 9    Data format 
    
Assembly: Human Feb. 2009 (GRCh37/hg19)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

These tracks are genome-wide maps on epigenetic marks surveyed by Roadmap Epigenomics Project. Each track is about one type of epigenetic mark, and contains multiple experiments assayed for that mark type. DNA methylation and histone modification are two types of most important epigenetic marks.

DNA methylation of human DNA mostly happens on cytosine bases of CpG dinucleotides. The methylated DNA usually prevent accessibility of regulatory proteins and hampers transcription, while unmethylated DNA is usually indicative of open chromatin. The MeDIP-Seq and MRE-Seq experiments are usually performed on same sample to identify genome-wide DNA methylation pattern. MeDIP-Seq (methylated DNA immunoprecipitation and sequencing) is a ChIP-based approach utilizing antibody against methylated cytosine. This method enriches methylated DNA and high read count indicates high likelihood of underlying region is methylated. The MRE-Seq (methylation restriction enzyme sequencing) uses methylation-sensitive restriction enzymes to digest DNA, and only cut at unmethylated restriction sites. The cut restriction sites will be detected by sequencing where reads aligned to a restriction site on reference genome means the restriction site is unmethylated.

The MethylC-Seq (MethylC sequencing) uses bisulfite to convert methylated cytosines to thymines before sequencing. The percentage of reads with a T versus a C indicates the percentage methylation at the cytosine. Details can be found in this paper Lister R, et al., Nature. 2009 Nov 19;462(7271):315-22. .

RRBS (Reduced-Representation-Bisulfite-Sequencing) is similar to MethylC-seq except RRBS uses restriction enzyme to fragment the genome into fragments suitably-sized for sequencing. While RRBS produces percent methylation similar to MethylC-seq, it is limited to cytosines that are within restriction fragments of a suitable size and then tend to measure CpG dense regions only. Details can be found in this paper: Meissener, A. et al., Nucleic Acids Res. 2005; 33(18): 5868-5877. .

Histone marks are critical epigenetic components. They are covalent modifications of amino acid residues of histone proteins, which modify protein's biochemical property and affect transcription and chromatin state. The histone marks are measured by ChIP-Seq experiments (chromatin immunoprecipitation followed by sequencing).

Display conventions

Each track can be turned on/off individually. Inside each track, sub-tracks are displayed in same vertical space and are overlayed with transparent colors for contrast. All tracks displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. Sub-tracks sharing same space use same scale.

Methods

Experimental protocols: follow this link for experimental protocols.

Data processing: EDACC carried out data processing and quality assessment. Details are fully explained here . In brief, sequencing reads were aligned with 'Pash' program to derive read density data. The read density data is prepared into 'wiggle' format files with fixed step length of 20 bp. Data in wiggle and other formats have been deposited in NCBI Gene Expression Omnibus database for public access.

Quality control: the HotSpot was one of the methods used to assess quality of ChIP-Seq experiments. The long track name includes a "Hotspot_Score" field indicates the percentage of sequencing reads found inside hotspot regions. The "Pcnt" field shows the percentile of current experiment score in this type of ChIP-Seq experiments (e.g., all H3K4me3 ChIP-Seq experiments). This value is subject to change in next Data Release. The most comprehensive and up-to-date description on QC Metrics used by the consortium can be found here .

Release Notes

The data is combination of Release II, III, IV, V, VI, VII, VIII and IX which were mapped to human reference genome version hg19. The data is production of Roadmap Epigenomics Project.

Please follow the link for Roadmap Epigenomics data access policy

Credits

These data were generated in labs from participating institutions of Roadmap Epigenomics Project.

Useful links