Assay Summary Input Summary Track Settings
 
Roadmap Epigenome Input Summary for 139 sample type(s)

Track collection: Assay Summary

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     AN Input 7  Adipose Nuclei Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0063 Pcnt=21 DonorID:7)    Data format 
     CD4M Input 20  CD4 Memory Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0599 Pcnt=47 DonorID:20)    Data format 
     CM Input 32  Colonic Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0221 Pcnt=36 DonorID:32)    Data format 
     H1 Input 31  H1 Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0894 Pcnt=73 Library:Solexa-10531)    Data format 
     iPS20b Input CE  iPS 20b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0083 Pcnt=26 DonorID:NA)    Data format 
     iPS18c Input CE  iPS 18c Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.006 Pcnt=17 DonorID:NA)    Data format 
     CD19 Input 1  CD19 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0634 Pcnt=52 DonorID:CD19_8/1/08)    Data format 
     iPS15b Input CE  iPS 15b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0085 Pcnt=27 DonorID:NA)    Data format 
     ESI3 Input CE  ES-I3 Cell Line Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.008 Pcnt=24 DonorID:NA)    Data format 
     CD3 Input 61  CD3 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0892 Pcnt=71 DonorID:CD3_39661)    Data format 
     AL Input 4  Adult Liver Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0846 Pcnt=68 DonorID:4)    Data format 
     MS Input 2  Muscle Satellite Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0303 Pcnt=41 DonorID:NA)    Data format 
     SM Input 62  Skeletal Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0033 Pcnt=5 DonorID:62)    Data format 
     ESI3 Input 19  ES-I3 Cell Line Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0959 Pcnt=74 Library:Solexa-10219)    Data format 
     MCD34 Input 36  Mobilized CD34 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0067 Pcnt=23 DonorID:RO01536)    Data format 
     iPS11a Input 34  iPS 11a Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0606 Pcnt=48 Library:Solexa-11734)    Data format 
     Treg Input 20  Treg Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0046 Pcnt=11 DonorID:20)    Data format 
     MCD34 Input 49  Mobilized_CD34_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0042 Pcnt=9 DonorID:RO01549)    Data format 
     PI Input 27  Pancreatic Islets Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1354 Pcnt=80 DonorID:pancreaticisletsnormal_3/27/09)    Data format 
     CD34 Input 61  CD34 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0832 Pcnt=67 DonorID:CD34_39661)    Data format 
     MS Input 3  Muscle Satellite Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0379 Pcnt=44 DonorID:NA)    Data format 
     SSM Input 28  Stomach Smooth Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0611 Pcnt=50 DonorID:28)    Data format 
     RM Input 29  Rectal Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0037 Pcnt=8 DonorID:29)    Data format 
     iPS15b Input 57  iPS 15b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=NA Library:Solexa-15157)    Data format 
     MS Input 1  Muscle Satellite Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0256 Pcnt=38 DonorID:NA)    Data format 
     iPS20b Input 32  iPS 20b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.071 Pcnt=55 Library:Solexa-10232)    Data format 
     RM Input 31  Rectal Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0034 Pcnt=6 DonorID:31)    Data format 
     FH Input 27  Fetal Heart Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0794 Pcnt=58 DonorID:H-22727)    Data format 
     MCD4 Input 37  Mobilized_CD4_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0049 Pcnt=14 DonorID:37)    Data format 
     DM Input 61  Duodenum Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0033 Pcnt=5 DonorID:61)    Data format 
     MCD34 Input 80  Mobilized_CD34_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0022 Pcnt=2 DonorID:RO01480)    Data format 
     iPS18b Input CE  iPS 18b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1046 Pcnt=76 DonorID:NA)    Data format 
     Th17 Input 20  Th17 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0863 Pcnt=70 DonorID:20)    Data format 
     MCD34 Input 28  Mobilized_CD34_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.082 Pcnt=64 DonorID:RO01508)    Data format 
     CD34 Input 23  CD34 Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0062 Pcnt=20 DonorID:123)    Data format 
     H1 Input 32  H1 Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0809 Pcnt=61 Library:Solexa-12532)    Data format 
     AK Input 27  Adult Kidney Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.006 Pcnt=17 DonorID:27)    Data format 
     RSM Input 30  Rectal Smooth Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0061 Pcnt=18 DonorID:30)    Data format 
     ADMSC Input 1  Adipose Derived Mesenchymal Stem Cell Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0093 Pcnt=29 DonorID:1)    Data format 
     SM Input 19  Skeletal Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0047 Pcnt=12 DonorID:19)    Data format 
     AN Input 92  Adipose Nuclei Input Signal from REMC/Broad (Hotspot_Score=0.0046 Pcnt=17)    Data format 
     AN Input 93  Adipose Nuclei Input Signal from REMC/Broad (Hotspot_Score=0.015 Pcnt=57)    Data format 
     AN Input 94  Adipose Nuclei Input Signal from REMC/Broad (Hotspot_Score=0.0096 Pcnt=40)    Data format 
     AN Input 95  Adipose Nuclei Input Signal from REMC/Broad (Hotspot_Score=0.005 Pcnt=23)    Data format 
     AL Input 3  Adult Liver Input Signal from REMC/Broad (Hotspot_Score=0.0183 Pcnt=67)    Data format 
     AL Input 5  Adult Liver Input Signal from REMC/Broad (Hotspot_Score=0.0242 Pcnt=73)    Data format 
     BMDMSC Input 57  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0145 Pcnt=53)    Data format 
     BMDMSC Input 58  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0166 Pcnt=63)    Data format 
     BMDMSC Input 59  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0142 Pcnt=50)    Data format 
     BMDMSC Input 60  Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0098 Pcnt=43)    Data format 
     BAC Input 12  Brain Anterior Caudate Input Signal from REMC/Broad (Hotspot_Score=0.0065 Pcnt=33)    Data format 
     BCG Input 12  Brain Cingulate Gyrus Input Signal from REMC/Broad (Hotspot_Score=0.0046 Pcnt=17)    Data format 
     BHM Input 12  Brain Hippocampus Middle Input Signal from REMC/Broad (Hotspot_Score=0.0047 Pcnt=20)    Data format 
     BITL Input 12  Brain Inferior Temporal Lobe Input Signal from REMC/Broad (Hotspot_Score=0.0095 Pcnt=37)    Data format 
     BMFL Input 12  Brain Mid Frontal Lobe Input Signal from REMC/Broad (Hotspot_Score=0.0042 Pcnt=7)    Data format 
     BSN Input 12  Brain Substantia Nigra Input Signal from REMC/Broad (Hotspot_Score=0.0045 Pcnt=10)    Data format 
     CD34 Input 23  CD34 Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0273 Pcnt=80)    Data format 
     CfBMDMSC Input 58  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0151 Pcnt=60)    Data format 
     CfBMDMSC Input 59  Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0129 Pcnt=47)    Data format 
     FB Input 84  Fetal Brain Input Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=3)    Data format 
     FL Input 66  Fetal Lung Input Signal from REMC/Broad (Hotspot_Score=0.006 Pcnt=30)    Data format 
     FL Input 84  Fetal Lung Input Signal from REMC/Broad (Hotspot_Score=0.0054 Pcnt=27)    Data format 
     HUES6 Input  HUES6 Input Signal from REMC/Broad (Hotspot_Score=0.0197 Pcnt=70)    Data format 
     HUES6 Input  HUES6 Input Signal from REMC/Broad (Hotspot_Score=0.0299 Pcnt=83)    Data format 
     SM Input 63  Skeletal Muscle Input Signal from REMC/Broad (Hotspot_Score=0.027 Pcnt=77)    Data format 
     ESWA7 Input CE  Input Lib MC 20100211 05--ChIP MC 20100208 Signal from REMC/Broad_ES-WA7    Data format 
     CD34 Input 92  CD34 Primary Cells Input UW RO Signal from REMC/Broad (Hotspot_Score=0.0497 Pcnt=87)    Data format 
     MCD34 Input RO01517  MCD34 Input Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     MCD34 Input RO01535  MCD34 Input Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     MCD34 Input RO01549  MCD34 Input Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     MCD34 Input RO01562  MCD34 Input Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     FB Input H22676  Fetal Brain Input Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     FL Input H22772  Fetal Lung Input Histone Modification by Chip-seq Signal from REMC/Broad    Data format 
     FB Input 76  Fetal Brain Input Signal from REMC/Broad (HOTSPOT_SCORE=0.0749 Pcnt=92)    Data format 
     FH Input 68  Fetal Heart Input Signal from REMC/Broad (HOTSPOT_SCORE=0.1218 Pcnt=100)    Data format 
     FK Input 35  Fetal Kidney Input Signal from REMC/Broad (HOTSPOT_SCORE=0.0625 Pcnt=83)    Data format 
     FL Input 72  Fetal Lung Input Signal from REMC/Broad (HOTSPOT_SCORE=0.0417 Pcnt=75)    Data format 
     MCD34 Input 80  Mobilized CD34 Primary Cells Input Signal from REMC/Broad (HOTSPOT_SCORE=0.0022 Pcnt=2)    Data format 
     MCD34 Input 17  Mobilized CD34 Primary Cells Input Signal from REMC/Broad (HOTSPOT_SCORE=0.0077 Pcnt=42)    Data format 
     MCD34 Input 35  Mobilized CD34 Primary Cells Input Signal from REMC/Broad (HOTSPOT_SCORE=0.0136 Pcnt=50)    Data format 
     MCD34 Input 49  Mobilized CD34 Primary Cells Input Signal from REMC/Broad (HOTSPOT_SCORE=0.0042 Pcnt=9)    Data format 
     MCD34 Input 62  Mobilized CD34 Primary Cells Input Signal from REMC/Broad (HOTSPOT_SCORE=0.0051 Pcnt=25)    Data format 
     ADMSCCC Input 93  Adipose Derived Mesenchymal Stem Cell Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0037 Pcnt=18)    Data format 
     MSCDACC Input 93  Mesenchymal Stem Cell Derived Adipocyte Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0044 Pcnt=23)    Data format 
     HUES64 Input Row-1726  HUES64 Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0057 Pcnt=31)    Data format 
     HUES48 Input Row-1725  HUES48 Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0035 Pcnt=16)    Data format 
     MSCDACC Input 92  Mesenchymal Stem Cell Derived Adipocyte Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0066 Pcnt=34)    Data format 
     ADMSCCC Input 92  Adipose Derived Mesenchymal Stem Cell Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0033 Pcnt=11)    Data format 
     HUES48 Input Row-1710  HUES48 Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0207 Pcnt=64)    Data format 
     HUES64 Input Row-1709  HUES64 Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0345 Pcnt=79)    Data format 
     BAC Input 149  Brain Anterior Caudate Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0095 Pcnt=39)    Data format 
     iPS20b Input 350  iPS-20b Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0106 Pcnt=52)    Data format 
     CD8N Input 100  CD8 Naive Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.062 Pcnt=89)    Data format 
     iPS20b Input 440  iPS-20b Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0046 Pcnt=25)    Data format 
     BSN Input 149  Brain Substantia Nigra Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0343 Pcnt=75)    Data format 
     CD8M Input 100  CD8 Memory Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0307 Pcnt=74)    Data format 
     CD4N Input 100  CD4 Naive Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0228 Pcnt=69)    Data format 
     CD4M Input 100  CD4 Memory Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0042 Pcnt=20)    Data format 
     SSM Input 161  Stomach Smooth Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0344 Pcnt=77)    Data format 
     DM Input 159  Duodenum Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0034 Pcnt=13)    Data format 
     CD4+CD25- Input 62  CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0101 Pcnt=49)    Data format 
     DSM Input 160  Duodenum Smooth Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0026 Pcnt=3)    Data format 
     hDCECC Input 264  hESC Derived CD184+ Endoderm Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0082 Pcnt=36)    Data format 
     CD4+CD25- Input 62  CD4+ CD25+ CD127- Treg Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0035 Pcnt=16)    Data format 
     CD4+CD25- Input 62  CD4+ CD25- Th Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0048 Pcnt=28)    Data format 
     CD4N Input 101  CD4 Naive Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0162 Pcnt=59)    Data format 
     CD4+CD25- Input 62  CD4+ CD25- CD45RA+ Naive Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.1152 Pcnt=98)    Data format 
     CD4M Input 101  CD4 Memory Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0048 Pcnt=28)    Data format 
     SM Input 157  Stomach Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0049 Pcnt=30)    Data format 
     MCD34 Input RO_01536  Mobilized CD34 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0029 Pcnt=5)    Data format 
     CD8M Input 101  CD8 Memory Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0166 Pcnt=61)    Data format 
     CD4+CD25- Input 62  CD4+ CD25int CD127+ Tmem Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0289 Pcnt=72)    Data format 
     CSM Input 83  Colon Smooth Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0023 Pcnt=2)    Data format 
     hDCECC Input 244  hESC Derived CD184+ Endoderm Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0103 Pcnt=51)    Data format 
     CD4+CD25- Input 62  CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0255 Pcnt=70)    Data format 
     CD4+CD25- Input 62  CD4+ CD25- CD45RO+ Memory Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0882 Pcnt=97)    Data format 
     BHM Input 149  Brain Hippocampus Middle Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0739 Pcnt=92)    Data format 
     iPS18a Input 342  iPS-18a Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0114 Pcnt=54)    Data format 
     AK Input 153  Adult Kidney Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0044 Pcnt=23)    Data format 
     CD8N Input 101  CD8 Naive Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (HOTSPOT_SCORE=0.0217 Pcnt=67)    Data format 
     BCG Input 49 21  BI Brain Cingulate Gyrus ChIP-Seq Input Donor 149 Library DNA_Lib 621 EA Release 6    Data format 
     BHM Input 50 86  BI Brain Hippocampus Middle ChIP-Seq Input Donor 150 Library DNA_Lib 986 EA Release 6    Data format 
     BITL Input 49 22  BI Brain Inferior Temporal Lobe ChIP-Seq Input Donor 149 Library DNA_Lib 622 EA Release 6    Data format 
     BMFL Input 49 14  BI Brain Mid Frontal Lobe ChIP-Seq Input Donor 149 Library DNA_Lib 614 EA Release 6    Data format 
     CM Input 55 69  BI Colonic Mucosa ChIP-Seq Input Donor 155 Library DNA_Lib 369 EA Release 6    Data format 
     CSM Input 56 24  BI Colon Smooth Muscle ChIP-Seq Input Donor 156 Library DNA_Lib 924 EA Release 6    Data format 
     IMR90 Input 05I1  IMR90 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2108 Pcnt=89 Library:IMR90-05-I1)    Data format 
     IMR90 Input LLI1  IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.244 Pcnt=100 Library:LL-I1)    Data format 
     IMR90 Input 06I1  IMR90 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2126 Pcnt=91 Library:IMR90-06-I1)    Data format 
     H1 Input 54  H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1195 Pcnt=79 Library:YL154)    Data format 
     H1 Input 62  H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.0803 Pcnt=59 Library:YL262)    Data format 
     H1 Input 1U  H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.187 Pcnt=88 Library:LLH1U)    Data format 
     IMR90 Input LLI2  IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2434 Pcnt=98 Library:LL-I2)    Data format 
     H1 Input I1  H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1133 Pcnt=77 Library:LL-H1-I1)    Data format 
     IMR90 Input SKI3  IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1603 Pcnt=86 Library:SK-I3)    Data format 
     IMR90 Input SKI2  IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.226 Pcnt=95 Library:SK-I2)    Data format 
     IMR90 Input 07I1  IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2408 Pcnt=97 Library:IMR90-07-I1)    Data format 
     H1 Input I2  H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1532 Pcnt=82 Library:LL-H1-I2)    Data format 
     IMR90 Input SKI1  IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2235 Pcnt=94 Library:SK-I1)    Data format 
     H1 Input 08  H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.083 Pcnt=65 Library:YL208)    Data format 
     H1 Input 19  H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1569 Pcnt=83 Library:DM219)    Data format 
     H1 Input 57  H1 Input Signal from REMC/UCSD (Hotspot_Score=0.0846 Pcnt=93)    Data format 
     H1 Input 28  H1 Input Signal from REMC/UCSD (Hotspot_Score=0.2124 Pcnt=97)    Data format 
     H9 Input 4  H9 Input SKH9-Signal from REMC/UCSD (Hotspot_Score=0.0778 Pcnt=90)    Data format 
     H9 Input 44  H9 Cell Line Input Signal from REMC/UCSD (HOTSPOT_SCORE=0.0066 Pcnt=33)    Data format 
     iD19.11 Input 1  iPS-DF-19.11 Input Signal from REMC/UCSD (HOTSPOT_SCORE=0.0702 Pcnt=10)    Data format 
     iD6.9 Input 1  iPS-DF-6.9 Input Signal from REMC/UCSD (HOTSPOT_SCORE=0.1863 Pcnt=10)    Data format 
     iPS_DF_19.11 Input SK446  iPS_DF_19.11 Input Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.16 Pcnt=100)    Data format 
     iPS_DF_6.9 Input SK445  iPS_DF_6.9 Input Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.08 Pcnt=95)    Data format 
     H1-BMP4 Input SK344  H1-BMP4 Input Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.01 Pcnt=48)    Data format 
     H1-BMP4 Input AK149  H1-BMP4 Input Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.01 Pcnt=48)    Data format 
     H1-BMP4 Input SK457  H1-BMP4 Input Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.01 Pcnt=48)    Data format 
     H1-BMP4 Input SK458  H1-BMP4 Input Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.01 Pcnt=48)    Data format 
     H1DMSC Input SK443  H1DMSC Input Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.05 Pcnt=80)    Data format 
     H1DMSC Input SK444  H1DMSC Input Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.08 Pcnt=95)    Data format 
     H1DNPCC Input SK459  H1DNPCC Input Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.02 Pcnt=62)    Data format 
     H1DNPCC Input SK506  H1DNPCC Input Histone Modification by Chip-seq Signal from REMC/UCSD (HOTSPOT_SCORE=0.01 Pcnt=48)    Data format 
     HDNP Input 22  UCSD H1 Derived Neuronal Progenitor Cultured Cells ChIP-Seq Input Library AK222 EA Release 6    Data format 
     H9 Input 38  UCSD H9 Cell Line ChIP-Seq Input Library SK338 EA Release 6    Data format 
     BMC Input 80  Breast_Myoepithelial_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0094 Pcnt=30 DonorID:RM080)    Data format 
     H1 Input 2  H1 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1575 Pcnt=85 DonorID:NA)    Data format 
     Bv Input 35 95  Breast vHMEC Histone Modification Input by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.019 Pcnt=33 DonorID:RM035)    Data format 
     H1 Input d1  H1 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.033 Pcnt=42 DonorID:NA)    Data format 
     Bv Input 35 20  Breast vHMEC Histone Modification Input by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0258 Pcnt=39 DonorID:RM035)    Data format 
     PBM Input 10 25  Peripheral_Blood_Mononuclear_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0645 Pcnt=53 DonorID:TC010)    Data format 
     PBM Input 10 26  Peripheral_Blood_Mononuclear_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0434 Pcnt=45 DonorID:TC010)    Data format 
     CD8N Input 01  CD8_Naive_Primary_Cells Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0211 Pcnt=35 DonorID:TC001)    Data format 
     BMC Input 66  Breast_Myoepithelial_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0159 Pcnt=32 DonorID:RM066)    Data format 
     PBM Input 12 43  Peripheral_Blood_Mononuclear_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0725 Pcnt=56 DonorID:TC012)    Data format 
     NCD Input 02  Neurosphere Cultured Cells Cortex Derived Input Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.0196 Pcnt=67)    Data format 
     NGED Input 02  Neurosphere Cultured Cells Ganglionic Eminence Derived Input Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.0183 Pcnt=58)    Data format 
     BGM Input HuFGM02  Brain Germinal Matrix Input Histone Modification by Chip-seq Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.0728 Pcnt=90)    Data format 
     FB Input HuFNSC01  Fetal Brain Input Histone Modification by Chip-seq Signal from REMC/UCSF-UBC (HOTSPOT_SCORE=0.0215 Pcnt=66)    Data format 
     FB Input 02 99  UCSF-UBC-USC Fetal Brain ChIP-Seq Input Donor HuFNSC02 Library A03499 EA Release 6    Data format 
     NCD Input 01 87  UCSF-UBC-USC Neurosphere Cultured Cells Cortex Derived ChIP-Seq Input Donor HuFNSC01 Library A03287 EA Release 6    Data format 
     NGED Input 01 88  UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived ChIP-Seq Input Donor HuFNSC01 Library A03288 EA Release 6    Data format 
     PFF Input 01 94  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells ChIP-Seq Input Donor skin01 Library A08394 EA Release 6    Data format 
     PFF Input 02 00  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells ChIP-Seq Input Donor skin02 Library A08400 EA Release 6    Data format 
     PFK Input 01 19  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells ChIP-Seq Input Donor skin01 Library A05019 EA Release 6    Data format 
     PFK Input 02 25  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells ChIP-Seq Input Donor skin02 Library A11925 EA Release 7    Data format 
     PFM Input 01 88  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells ChIP-Seq Input Donor skin01 Library A08388 EA Release 7    Data format 
     PFM Input 02 48  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells ChIP-Seq Input Donor skin02 Library A08748 EA Release 7    Data format 
     HBDM Input 12  UCSD H1 BMP4 Derived Mesendoderm Cultured Cells ChIP-Seq Input Library AK312 EA Release 7    Data format 
     HBDM Input 18  UCSD H1 BMP4 Derived Mesendoderm Cultured Cells ChIP-Seq Input Library AK318 EA Release 7    Data format 
     HBDT Input 15  UCSD H1 BMP4 Derived Trophoblast Cultured Cells ChIP-Seq Input Library AK315 EA Release 7    Data format 
     AT Input 03 47  UCSD Adipose Tissue ChIP-Seq Input Donor STL003 Library AK347 EA Release 8    Data format 
     AG Input 03 23  UCSD Adrenal Gland ChIP-Seq Input Donor STL003 Library AK323 EA Release 8    Data format 
     Aorta Input 03 60  UCSD Aorta ChIP-Seq Input Donor STL003 Library AY60 EA Release 8    Data format 
     Bladder Input 03 59  UCSD Bladder ChIP-Seq Input Donor STL003 Library AY59 EA Release 8    Data format 
     Esophagus Input 03 26  UCSD Esophagus ChIP-Seq Input Donor STL003 Library AK326 EA Release 8    Data format 
     IMR90 Input 06  UCSD IMR90 Cell Line ChIP-Seq Input Library AK106 EA Release 8    Data format 
     LV Input 01 37  UCSD Left Ventricle ChIP-Seq Input Donor STL001 Library AK237 EA Release 8    Data format 
     LV Input 03 62  UCSD Left Ventricle ChIP-Seq Input Donor STL003 Library AY62 EA Release 8    Data format 
     Lung Input 02 61  UCSD Lung ChIP-Seq Input Donor STL002 Library AY61 EA Release 8    Data format 
     Pancreas Input 03 44  UCSD Pancreas ChIP-Seq Input Donor STL003 Library AK344 EA Release 8    Data format 
     PM Input 03 57  UCSD Psoas Muscle ChIP-Seq Input Donor STL003 Library AY57 EA Release 8    Data format 
     RA Input 03 63  UCSD Right Atrium ChIP-Seq Input Donor STL003 Library AY63 EA Release 8    Data format 
     RV Input 03 53  UCSD Right Ventricle ChIP-Seq Input Donor STL003 Library AK353 EA Release 8    Data format 
     SC Input 03 58  UCSD Sigmoid Colon ChIP-Seq Input Donor STL003 Library AY58 EA Release 8    Data format 
     SI Input 01 25  UCSD Small Intestine ChIP-Seq Input Donor STL001 Library AK225 EA Release 8    Data format 
     Spleen Input 03 50  UCSD Spleen ChIP-Seq Input Donor STL003 Library AK350 EA Release 8    Data format 
     BLEC Input 80 97  UCSF-UBC-USC Breast Luminal Epithelial Cells ChIP-Seq Input Donor RM080 Library HS2797 EA Release 8    Data format 
     BSC Input 80 03  UCSF-UBC-USC Breast Stem Cells ChIP-Seq Input Donor RM080 Library HS2803 EA Release 8    Data format 
     CD8N Input 01 46  UCSF-UBC-USC CD8 Naive Primary Cells ChIP-Seq Input Donor TC001 Library HS2846 EA Release 8    Data format 
     PFF Input 03 71  UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells ChIP-Seq Input Donor skin03 Library A15571 EA Release 8    Data format 
     PFK Input 03 78  UCSF-UBC-USC Penis Foreskin Keratinocyte Primary Cells ChIP-Seq Input Donor skin03 Library A15578 EA Release 8    Data format 
     PFM Input 03 85  UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells ChIP-Seq Input Donor skin03 Library A15585 EA Release 8    Data format 
     UCSF4star Input 74  UCSF-UBC-USC UCSF-4star Cell Line ChIP-Seq Input Library A14674 EA Release 8    Data format 
     Gastric Input 01 47  UCSD Gastric ChIP-Seq Input Donor STL001 Library CY47 EA Release 9    Data format 
     Lung Input 01 53  UCSD Lung ChIP-Seq Input Donor STL001 Library AY353 EA Release 9    Data format 
     PM Input 01 51  UCSD Psoas Muscle ChIP-Seq Input Donor STL001 Library CY51 EA Release 9    Data format 
     RV Input 01 50  UCSD Right Ventricle ChIP-Seq Input Donor STL001 Library CY50 EA Release 9    Data format 
     AG Input 02 48  UCSD Adrenal Gland ChIP-Seq Input Donor STL002 Library CY48 EA Release 9    Data format 
     Aorta Input 02 57  UCSD Aorta ChIP-Seq Input Donor STL002 Library AY357 EA Release 9    Data format 
     Gastric Input 02 31  UCSD Gastric ChIP-Seq Input Donor STL002 Library AY331 EA Release 9    Data format 
     Ovary Input 02 94  UCSD Ovary ChIP-Seq Input Donor STL002 Library AY294 EA Release 9    Data format 
     Pancreas Input 02 45  UCSD Pancreas ChIP-Seq Input Donor STL002 Library CY45 EA Release 9    Data format 
     PM Input 02 32  UCSD Psoas Muscle ChIP-Seq Input Donor STL002 Library AY332 EA Release 9    Data format 
     Spleen Input 02 33  UCSD Spleen ChIP-Seq Input Donor STL002 Library AY333 EA Release 9    Data format 
     SC Input 01 91  UCSD Sigmoid Colon ChIP-Seq Input Donor STL001 Library CY191 EA Release 9    Data format 
     Bladder Input 03 49  UCSD Bladder ChIP-Seq Input Donor STL003 Library CY49 EA Release 9    Data format 
     AL Input 11 59  UCSD Adult Liver ChIP-Seq Input Donor STL011 Library AY359 EA Release 9    Data format 
     Esophagus Input 02 74  UCSD Esophagus ChIP-Seq Input Donor STL002 Library CY174 EA Release 9    Data format 
     SI Input 02 10  UCSD Small Intestine ChIP-Seq Input Donor STL002 Library AY510 EA Release 9    Data format 
     Spleen Input 01 55  UCSD Spleen ChIP-Seq Input Donor STL001 Library AY355 EA Release 9    Data format 
     HDNP Input 07  UCSD H1 Derived Neuronal Progenitor Cultured Cells ChIP-Seq Input Library AK407 EA Release 9    Data format 
     Thymus Input 01 95  UCSD Thymus ChIP-Seq Input Donor STL001 Library AY295 EA Release 9    Data format 
     Lung Input 02 96  UCSD Lung ChIP-Seq Input Donor STL002 Library AY296 EA Release 9    Data format 
     Gastric Input 03 41  UCSD Gastric ChIP-Seq Input Donor STL003 Library AK341 EA Release 9    Data format 
     NGED Input 03 57  UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived ChIP-Seq Input Donor HuFNSC03 Library A16057 EA Release 9    Data format 
     BF Input 71 46  UCSF-UBC-USC Breast Fibroblast Primary Cells ChIP-Seq Input Donor RM071 Library A21646 EA Release 9    Data format 
     UCSF4* Input 02  UCSF-UBC-USC UCSF-4* Cell Line ChIP-Seq Input Library A19302 EA Release 9    Data format 
     NGED Input 04 09  UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived ChIP-Seq Input Donor HuFNSC04 Library A19309 EA Release 9    Data format 
     PI Input 13 74  UCSF-UBC-USC Pancreatic Islets ChIP-Seq Input Donor ZGI 213 Library A22474 EA Release 9    Data format 
     PCS Input 02 16  UCSF-UBC-USC Placenta Chorion Smooth ChIP-Seq Input Donor CTL02 Library A21716 EA Release 9    Data format 
     PBM Input 16 39  UCSF-UBC-USC Peripheral Blood Mononuclear Primary Cells ChIP-Seq Input Donor TC016 Library A21639 EA Release 9    Data format 
     PA Input 02 23  UCSF-UBC-USC Placenta Amnion ChIP-Seq Input Donor CTL02 Library A21723 EA Release 9    Data format 
     PBM Input 15 32  UCSF-UBC-USC Peripheral Blood Mononuclear Primary Cells ChIP-Seq Input Donor TC015 Library A21632 EA Release 9    Data format 
     CfBMDMSC Input 57 39  BI Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells ChIP-Seq Input Donor 57 Library DNA_Lib 839 EA Release 9    Data format 
     CCT Input 32 78  BI CD4+ CD25- Th Primary Cells ChIP-Seq Input Donor 332 Library DNA_Lib 2278 EA Release 9    Data format 
     CCCNN Input 32 79  BI CD4+ CD25- CD45RA+ Naive Primary Cells ChIP-Seq Input Donor 332 Library DNA_Lib 2279 EA Release 9    Data format 
     CCIPsMpT Input 32 76  BI CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells ChIP-Seq Input Donor 332 Library DNA_Lib 2276 EA Release 9    Data format 
     CCCTmem Input 32 77  BI CD4+ CD25int CD127+ Tmem Primary Cells ChIP-Seq Input Donor 332 Library DNA_Lib 2277 EA Release 9    Data format 
     DSM Input 74 93  BI Duodenum Smooth Muscle ChIP-Seq Input Donor 174 REMC 28 Library DNA_Lib 993 EA Release 9    Data format 
     CCIPsT Input 32 80  BI CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells ChIP-Seq Input Donor 332 Library DNA_Lib 2280 EA Release 9    Data format 
     CD3 Input 24 40  BI CD3 Primary Cells ChIP-Seq Input Donor 24 Library DNA_Lib 840 EA Release 9    Data format 
     HDN Input 93  BI H9 Derived Neuron Cultured Cells ChIP-Seq Input Library Lib EpiLabSPL Row 1693 EA Release 9    Data format 
     CD19 Input 0 19  BI CD19 Primary Cells ChIP-Seq Input Donor CD19_0/0/00 Library Lib EpiLabSPL Row 1819 EA Release 9    Data format 
     CD15 Input 23.0 23  BI CD15 Primary Cells ChIP-Seq Input Donor 23.0 Library Lib EpiLabSPL Row 623 EA Release 9    Data format 
     CfBMDMSC Input 60 27  BI Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells ChIP-Seq Input Donor 60 Library Lib EpiLabSPL Row 1727 EA Release 9    Data format 
     CfBMDMSC Input 58  BI Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells ChIP-Seq Input Donor 58 Library Lib:MC:20100726:14--ChIP:MC:20100713:14:chondrogenic dif cells:WCE EA Release 9    Data format 
     HDNP Input CE  BI H9 Derived Neuronal Progenitor Cultured Cells ChIP-Seq Input Library Lib:RI:20101012:12--ChIP:MA:20100927:12:hNP (ES H9 derived Nuronal Progenitors):WCE EA Release 9    Data format 
     BAG Input 49 35  BI Brain Angular Gyrus ChIP-Seq Input Donor 149 Library DNA_Lib 635 EA Release 9    Data format 
     CCCTreg Input 32 94  BI CD4+ CD25+ CD127- Treg Primary Cells ChIP-Seq Input Donor 332 Library DNA_Lib 2094 EA Release 9    Data format 
     hDCEcto Input 12  BI hESC Derived CD56+ Ectoderm Cultured Cells ChIP-Seq Input Library DNA_Lib 1812 EA Release 9    Data format 
     hDCEcto Input 66  BI hESC Derived CD56+ Ectoderm Cultured Cells ChIP-Seq Input Library DNA_Lib 2066 EA Release 9    Data format 
     CCCMM Input 32 01  BI CD4+ CD25- CD45RO+ Memory Primary Cells ChIP-Seq Input Donor 332 Library DNA_Lib 2101 EA Release 9    Data format 
     hDCM Input 18  BI hESC Derived CD56+ Mesoderm Cultured Cells ChIP-Seq Input Library DNA_Lib 1318 EA Release 9    Data format 
     hDCM Input 17  BI hESC Derived CD56+ Mesoderm Cultured Cells ChIP-Seq Input Library DNA_Lib 1317 EA Release 9    Data format 
     CD19 Input 01 28  UW CD19 Primary Cells ChIP-Seq Input Donor RO 01701 Library Histone.DS21628 EA Release 9    Data format 
     CD56 Input 01 29  UW CD56 Primary Cells ChIP-Seq Input Donor RO 01701 Library Histone.DS21629 EA Release 9    Data format 
     FT Input 44 08  UW Fetal Thymus ChIP-Seq Input Donor H-24644 Library Histone.DS21508 EA Release 9    Data format 
     FIL Input 95 06  UW Fetal Intestine Large ChIP-Seq Input Donor H-24595 Library Histone.DS21506 EA Release 9    Data format 
     FIS Input 95 07  UW Fetal Intestine Small ChIP-Seq Input Donor H-24595 Library Histone.DS21507 EA Release 9    Data format 
     FML Input 44 09  UW Fetal Muscle Leg ChIP-Seq Input Donor H-24644 Library Histone.DS21509 EA Release 9    Data format 
     CD3 Input 01 26  UW CD3 Primary Cells ChIP-Seq Input Donor RO 01701 Library Histone.DS21626 EA Release 9    Data format 
     CD4 Input 79 41  UW CD4 Primary Cells ChIP-Seq Input Donor RO 01679 Library Histone.DS21541 EA Release 9    Data format 
     CD8 Input 79 42  UW CD8 Primary Cells ChIP-Seq Input Donor RO 01679 Library Histone.DS21542 EA Release 9    Data format 
     CD14 Input 01 27  UW CD14 Primary Cells ChIP-Seq Input Donor RO 01701 Library Histone.DS21627 EA Release 9    Data format 
     FS Input 39 96  UW Fetal Stomach ChIP-Seq Input Donor H-24639 Library Histone.DS22596 EA Release 9    Data format 
     FMT Input 54 31  UW Fetal Muscle Trunk ChIP-Seq Input Donor H-24854 Library Histone.DS23031 EA Release 9    Data format 
     FP Input 96 24  UW Fetal Placenta ChIP-Seq Input Donor H-24996 Library Histone.DS23024 EA Release 9    Data format 
     FAG Input 00 62  UW Fetal Adrenal Gland ChIP-Seq Input Donor H-24800 Library Histone.DS23062 EA Release 9    Data format 
    
Assembly: Human Feb. 2009 (GRCh37/hg19)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

These tracks are genome-wide maps on epigenetic marks surveyed by Roadmap Epigenomics Project. Each track is about one type of epigenetic mark, and contains multiple experiments assayed for that mark type. DNA methylation and histone modification are two types of most important epigenetic marks.

DNA methylation of human DNA mostly happens on cytosine bases of CpG dinucleotides. The methylated DNA usually prevent accessibility of regulatory proteins and hampers transcription, while unmethylated DNA is usually indicative of open chromatin. The MeDIP-Seq and MRE-Seq experiments are usually performed on same sample to identify genome-wide DNA methylation pattern. MeDIP-Seq (methylated DNA immunoprecipitation and sequencing) is a ChIP-based approach utilizing antibody against methylated cytosine. This method enriches methylated DNA and high read count indicates high likelihood of underlying region is methylated. The MRE-Seq (methylation restriction enzyme sequencing) uses methylation-sensitive restriction enzymes to digest DNA, and only cut at unmethylated restriction sites. The cut restriction sites will be detected by sequencing where reads aligned to a restriction site on reference genome means the restriction site is unmethylated.

The MethylC-Seq (MethylC sequencing) uses bisulfite to convert methylated cytosines to thymines before sequencing. The percentage of reads with a T versus a C indicates the percentage methylation at the cytosine. Details can be found in this paper Lister R, et al., Nature. 2009 Nov 19;462(7271):315-22. .

RRBS (Reduced-Representation-Bisulfite-Sequencing) is similar to MethylC-seq except RRBS uses restriction enzyme to fragment the genome into fragments suitably-sized for sequencing. While RRBS produces percent methylation similar to MethylC-seq, it is limited to cytosines that are within restriction fragments of a suitable size and then tend to measure CpG dense regions only. Details can be found in this paper: Meissener, A. et al., Nucleic Acids Res. 2005; 33(18): 5868-5877. .

Histone marks are critical epigenetic components. They are covalent modifications of amino acid residues of histone proteins, which modify protein's biochemical property and affect transcription and chromatin state. The histone marks are measured by ChIP-Seq experiments (chromatin immunoprecipitation followed by sequencing).

Display conventions

Each track can be turned on/off individually. Inside each track, sub-tracks are displayed in same vertical space and are overlayed with transparent colors for contrast. All tracks displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. Sub-tracks sharing same space use same scale.

Methods

Experimental protocols: follow this link for experimental protocols.

Data processing: EDACC carried out data processing and quality assessment. Details are fully explained here . In brief, sequencing reads were aligned with 'Pash' program to derive read density data. The read density data is prepared into 'wiggle' format files with fixed step length of 20 bp. Data in wiggle and other formats have been deposited in NCBI Gene Expression Omnibus database for public access.

Quality control: the HotSpot was one of the methods used to assess quality of ChIP-Seq experiments. The long track name includes a "Hotspot_Score" field indicates the percentage of sequencing reads found inside hotspot regions. The "Pcnt" field shows the percentile of current experiment score in this type of ChIP-Seq experiments (e.g., all H3K4me3 ChIP-Seq experiments). This value is subject to change in next Data Release. The most comprehensive and up-to-date description on QC Metrics used by the consortium can be found here .

Release Notes

The data is combination of Release II, III, IV, V, VI, VII, VIII and IX which were mapped to human reference genome version hg19. The data is production of Roadmap Epigenomics Project.

Please follow the link for Roadmap Epigenomics data access policy

Credits

These data were generated in labs from participating institutions of Roadmap Epigenomics Project.

Useful links