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Configure Tracks on UCSC Genome Browser: Human Feb. 2009 (GRCh37/hg19)
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+   Hub: Cancer Genomics Tracks    
+   Mapping and Sequencing    
+   Genes and Gene Predictions    
+   Phenotype and Literature    
+   mRNA and EST    
+   Expression    
-   Regulation    
ENCODE Regulation Integrated Regulation from ENCODE
     Txn Fac ChIP V2     Transcription Factor ChIP-seq from ENCODE (V2)
     Txn Factor ChIP     Transcription Factor ChIP-seq Clusters (161 factors) from ENCODE with Factorbook Motifs
     Txn Factr ChIP E3     Transcription Factor ChIP-seq Clusters (338 factors, 130 cell types) from ENCODE 3
     DNase Clusters     DNaseI Hypersensitivity Clusters in 125 cell types from ENCODE (V3)
     Layered H3K27Ac     H3K27Ac Mark (Often Found Near Active Regulatory Elements) on 7 cell lines from ENCODE
     Layered H3K4Me3     H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE
     Layered H3K4Me1     H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE
     Transcription     Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE
CD34 DnaseI Eur. Inst. Oncology/J. C. Venter Inst. Nuclease Accessible Sites
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
ENC Chromatin ENCODE Chromatin Interactions
     UW 5C    DownloadsChromatin Interactions by 5C from ENCODE/University of Washington
     UMass 5C     Chromatin Interactions by 5C from ENCODE/Dekker Univ. Mass.
     GIS ChIA-PET     Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan
ENC DNA Methyl ENCODE DNA Methylation
     HAIB Methyl450     CpG Methylation by Methyl 450K Bead Arrays from ENCODE/HAIB
     HAIB Methyl RRBS     DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha
ENC DNase/FAIRE ENCODE Open Chromatin by DNaseI HS and FAIRE
     UW DNaseI HS     DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
     UW DNaseI DGF     DNaseI Digital Genomic Footprinting from ENCODE/University of Washington
     UNC FAIRE     Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill)
     Duke DNaseI HS     Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)
     Open Chrom Synth     DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom(Duke/UNC/UTA)
     Uniform DNaseI HS     DNaseI Hypersensitivity Uniform Peaks from ENCODE/Analysis
     Master DNaseI HS     DNaseI Hypersensitive Site Master List (125 cell types) from ENCODE/Analysis
ENC Histone ENCODE Histone Modification
     UW Histone     Histone Modifications by ChIP-seq from ENCODE/University of Washington
     SYDH Histone     Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard
     Broad Histone     Histone Modifications by ChIP-seq from ENCODE/Broad Institute
     Broad ChromHMM     Chromatin State Segmentation by HMM from ENCODE/Broad
ENC RNA Binding ENCODE RNA Binding Proteins
     SUNY RIP-seq     RIP-seq from ENCODE/SUNY Albany
     SUNY RIP Tiling     RNA Binding Protein Associated RNA by Tiling Array from ENCODE/SUNY Albany
     SUNY RIP GeneST     RNA Binding Protein Associated RNA by RIP-chip GeneST from ENCODE/SUNY Albany
ENC TF Binding ENCODE Transcription Factor Binding
     Uniform TFBS     Transcription Factor ChIP-seq Uniform Peaks from ENCODE/Analysis
     ENCODE 3 TFBS     Transcription Factor ChIP-seq Peaks (338 factors in 130 cell types) from ENCODE 3
     UW CTCF Binding     CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
     UTA TFBS     Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)
     UChicago TFBS     Transcription Factor Binding Sites by Epitope-Tag from ENCODE/UChicago
     SYDH TFBS     Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard
     HAIB TFBS     Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
FANTOM5 FANTOM5: Mapped transcription start sites (TSS) and their usage
     TSS activity (TPM)     FANTOM5: TSS activity per sample (TPM)
     TSS activity - read counts     FANTOM5: TSS activity per sample read counts
     FANTOM CAT     FANTOM5: atlas of human long non-coding RNAs with accurate 5' ends
     Max counts of CAGE reads     FANTOM5: Max counts of CAGE reads
     Total counts of CAGE reads     FANTOM5: Total counts of CAGE reads
     TSS peaks     FANTOM5: DPI peak, robust set
     Enhancer - promoter correlations distances organ     FANTOM5: Enhancer - promoter correlations distances organ
     Enhancer - promoter correlations distances cell type     FANTOM5: Enhancer - promoter correlations distances cell type
     FANTOM-NET Enhancers     FANTOM5: FANTOM-NET Enhancers
     Enhancers     FANTOM5: Enhancers
FSU Repli-chip Replication Timing by Repli-chip from ENCODE/FSU
GeneHancer GeneHancer Regulatory Elements and Gene Interactions
Genome Segments Genome Segmentations from ENCODE
GTEx Combined eQTL Combined Expression QTLs from 44 Tissues from GTEx (midpoint release, V6)
GTEx Tissue eQTL Expression QTLs in 44 tissues from GTEx (midpoint release, V6)
JASPAR Transcription Factors JASPAR Transcription Factor Binding Site Database
NKI Nuc Lamina NKI Nuclear Lamina Associated Domains (LaminB1 DamID)
     NKI LADs (Tig3)     NKI LADs (Lamina Associated Domains, Tig3 cells)
     LaminB1 (Tig3)     NKI LaminB1 DamID Map (log2-ratio scores, Tig3 cells)
ORegAnno Regulatory elements from ORegAnno
Rao 2014 Hi-C Hi-C on 7 cell lines from Rao 2014
ReMap ChIP-seq ReMap Atlas of Regulatory Regions
Stanf Nucleosome Nucleosome Position by MNase-seq from ENCODE/Stanford/BYU
SUNY SwitchGear RNA Binding Protein Associated RNA by SwitchGear from ENCODE/SUNY Albany
SwitchGear TSS SwitchGear Genomics Transcription Start Sites
TFBS Conserved HMR Conserved Transcription Factor Binding Sites
TS miRNA Targets TargetScan predicted microRNA target sites
     TS miRNA v7.2     Predicted microRNA Target Sites from TargetScanHuman 7.2 (March 2018)
     TS miRNA sites     TargetScan miRNA Regulatory Sites (Release 5.1, April 2009)
UCSF Brain Methyl UCSF Brain DNA Methylation
UMMS Brain Hist Brain Histone H3K4me3 ChIP-Seq from Univ. Mass. Medical School (Akbarian/Weng)
UW Repli-seq Replication Timing by Repli-seq from ENCODE/University of Washington
VISTA Enhancers VISTA Enhancers
+   Comparative Genomics    
+   Neandertal Assembly and Analysis    
+   Denisova Assembly and Analysis    
+   Variation    
+   Repeats