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Configure Tracks on UCSC Genome Browser: Human Feb. 2009 (GRCh37/hg19)
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-   Hub: Roadmap Epigenomics Data Complete Collection at Wash U VizHub    
Broad Histone Histone Modifications by ChIP-seq from REMC/Broad
UCSD Histone Histone Modifications by ChIP-seq from REMC/UCSD
UCSF-UBC-USC Histone Histone Modification by Chip-seq Signal from REMC/UCSF-UBC-USC
DNase DNase Hypersensitivity Raw Signal from REMC/UW
Footprinting Genomic Footprinting from REMC/UW
RNA RNA-seq Signal from REMC
DNA Methylation DNA Methylation from REMC
By Assay Roadmap data by assay
     smRNA-Seq     smRNA-Seq tracks for 15 sample type(s)
     RRBS     RRBS tracks for 70 sample type(s)
     mRNA-Seq     mRNA-Seq tracks for 80 sample type(s)
     MRE-Seq     MRE-Seq tracks for 18 sample type(s)
     MeDIP-Seq     MeDIP-Seq tracks for 19 sample type(s)
     Input     Input tracks for 138 sample type(s)
     H4K91ac     H4K91ac tracks for 6 sample type(s)
     H4K8ac     H4K8ac tracks for 7 sample type(s)
     H4K5ac     H4K5ac tracks for 3 sample type(s)
     H4K20me1     H4K20me1 tracks for 3 sample type(s)
     H4K12ac     H4K12ac tracks for 1 sample type(s)
     H3T11ph     H3T11ph tracks for 1 sample type(s)
     H3K9me3     H3K9me3 tracks for 127 sample type(s)
     H3K9me1     H3K9me1 tracks for 1 sample type(s)
     H3K9ac     H3K9ac tracks for 49 sample type(s)
     H3K79me2     H3K79me2 tracks for 5 sample type(s)
     H3K79me1     H3K79me1 tracks for 7 sample type(s)
     H3K56ac     H3K56ac tracks for 3 sample type(s)
     H3K4me3     H3K4me3 tracks for 120 sample type(s)
     H3K4me2     H3K4me2 tracks for 8 sample type(s)
     H3K4me1     H3K4me1 tracks for 125 sample type(s)
     H3K4ac     H3K4ac tracks for 8 sample type(s)
     H3K36me3     H3K36me3 tracks for 130 sample type(s)
     H3K27me3     H3K27me3 tracks for 125 sample type(s)
     H3K27ac     H3K27ac tracks for 96 sample type(s)
     H3K23me2     H3K23me2 tracks for 2 sample type(s)
     H3K23ac     H3K23ac tracks for 8 sample type(s)
     H3K18ac     H3K18ac tracks for 8 sample type(s)
     H3K14ac     H3K14ac tracks for 6 sample type(s)
     H2BK5ac     H2BK5ac tracks for 7 sample type(s)
     H2BK20ac     H2BK20ac tracks for 3 sample type(s)
     H2BK15ac     H2BK15ac tracks for 5 sample type(s)
     H2BK12ac     H2BK12ac tracks for 6 sample type(s)
     H2BK120ac     H2BK120ac tracks for 7 sample type(s)
     H2AK9ac     H2AK9ac tracks for 1 sample type(s)
     H2AK5ac     H2AK5ac tracks for 7 sample type(s)
     H2A.Z     H2A.Z tracks for 7 sample type(s)
     DGF     DGF tracks for 21 sample type(s)
     ChromatinAccessibility     ChromatinAccessibility tracks for 89 sample type(s)
     Bisulfite-Seq     Bisulfite-Seq tracks for 48 sample type(s)
By Sample Roadmap data by sample
     UCSF-4star     UCSF-4star tracks for 8 assay type(s)
     UCSF-4Star     UCSF-4Star tracks for 6 assay type(s)
     Treg Primary Cells     Treg Primary Cells tracks for 5 assay type(s)
     Thymus     Thymus tracks for 7 assay type(s)
     Th17 Primary Cells     Th17 Primary Cells tracks for 2 assay type(s)
     Testis Spermatozoa Primary Cells     Testis Spermatozoa Primary Cells tracks for 1 assay type(s)
     Stomach Smooth Muscle     Stomach Smooth Muscle tracks for 9 assay type(s)
     Stomach Mucosa     Stomach Mucosa tracks for 8 assay type(s)
     Stomach Mucosa     Stomach Mucosa tracks for 7 assay type(s)
     Spleen     Spleen tracks for 9 assay type(s)
     Small Intestine     Small Intestine tracks for 10 assay type(s)
     Skeletal Muscle     Skeletal Muscle tracks for 2 assay type(s)
     Sigmoid Colon     Sigmoid Colon tracks for 9 assay type(s)
     Right Ventricle     Right Ventricle tracks for 8 assay type(s)
     Right Atrium     Right Atrium tracks for 7 assay type(s)
     Rectal Smooth Muscle     Rectal Smooth Muscle tracks for 9 assay type(s)
     Rectal Mucosa     Rectal Mucosa tracks for 9 assay type(s)
     Psoas Muscle     Psoas Muscle tracks for 9 assay type(s)
     Primary Fibroblast     Primary Fibroblast tracks for 1 assay type(s)
     Placenta Villi     Placenta Villi tracks for 1 assay type(s)
     Placenta Trophoblast Primary Cells     Placenta Trophoblast Primary Cells tracks for 1 assay type(s)
     Placenta Chorion Smooth     Placenta Chorion Smooth tracks for 7 assay type(s)
     Placenta Basal Plate     Placenta Basal Plate tracks for 1 assay type(s)
     Placenta Amnion     Placenta Amnion tracks for 8 assay type(s)
     Peripheral Blood Mononuclear Primary Cells     Peripheral Blood Mononuclear Primary Cells tracks for 9 assay type(s)
     Peripheral Blood Mononuclear Primary Cells     Peripheral Blood Mononuclear Primary Cells tracks for 8 assay type(s)
     Penis Foreskin Melanocyte Primary Cells     Penis Foreskin Melanocyte Primary Cells tracks for 13 assay type(s)
     Penis Foreskin Keratinocyte Primary Cells     Penis Foreskin Keratinocyte Primary Cells tracks for 15 assay type(s)
     Penis Foreskin Fibroblast Primary Cells     Penis Foreskin Fibroblast Primary Cells tracks for 14 assay type(s)
     Pancreatic Islets     Pancreatic Islets tracks for 10 assay type(s)
     Pancreas     Pancreas tracks for 10 assay type(s)
     Ovary     Ovary tracks for 8 assay type(s)
     Neurosphere Cultured Cells Ganglionic Eminence Derived     Neurosphere Cultured Cells Ganglionic Eminence Derived tracks for 12 assay type(s)
     Neurosphere Cultured Cells Cortex Derived     Neurosphere Cultured Cells Cortex Derived tracks for 11 assay type(s)
     Muscle Satellite Cultured Cells     Muscle Satellite Cultured Cells tracks for 8 assay type(s)
     Mobilized CD8 Primary Cells     Mobilized CD8 Primary Cells tracks for 1 assay type(s)
     Mobilized CD4 Primary Cells     Mobilized CD4 Primary Cells tracks for 2 assay type(s)
     Mobilized CD34 Primary Cells     Mobilized CD34 Primary Cells tracks for 2 assay type(s)
     Mobilized CD3 Primary Cells     Mobilized CD3 Primary Cells tracks for 1 assay type(s)
     Mobiled CD34     Mobiled CD34 tracks for 10 assay type(s)
     Mesenchymal Stem Cell Derived Adipocyte Cultured Cells     Mesenchymal Stem Cell Derived Adipocyte Cultured Cells tracks for 7 assay type(s)
     Lung     Lung tracks for 8 assay type(s)
     Left Ventricle     Left Ventricle tracks for 9 assay type(s)
     iPS27e     iPS27e tracks for 1 assay type(s)
     iPS27b     iPS27b tracks for 1 assay type(s)
     iPS20b     iPS20b tracks for 9 assay type(s)
     iPS18c     iPS18c tracks for 7 assay type(s)
     iPS18b     iPS18b tracks for 2 assay type(s)
     iPS18a     iPS18a tracks for 9 assay type(s)
     iPS17b     iPS17b tracks for 1 assay type(s)
     iPS17a     iPS17a tracks for 1 assay type(s)
     iPS15b     iPS15b tracks for 8 assay type(s)
     iPS11c     iPS11c tracks for 1 assay type(s)
     iPS11b     iPS11b tracks for 1 assay type(s)
     iPS11a     iPS11a tracks for 3 assay type(s)
     iPS-DF.6.9     iPS-DF.6.9 tracks for 1 assay type(s)
     iPS-DF.6.9     iPS-DF.6.9 tracks for 1 assay type(s)
     iPS-DF.19.11     iPS-DF.19.11 tracks for 1 assay type(s)
     iPS-DF.19.11     iPS-DF.19.11 tracks for 1 assay type(s)
     iPS DF 6.9     iPS DF 6.9 tracks for 8 assay type(s)
     iPS DF 4.7     iPS DF 4.7 tracks for 1 assay type(s)
     iPS DF 19.7     iPS DF 19.7 tracks for 1 assay type(s)
     iPS DF 19.11     iPS DF 19.11 tracks for 8 assay type(s)
     iPS DF 19     iPS DF 19 tracks for 1 assay type(s)
     IMR90     IMR90 tracks for 33 assay type(s)
     HUES9     HUES9 tracks for 1 assay type(s)
     HUES8     HUES8 tracks for 1 assay type(s)
     HUES66     HUES66 tracks for 1 assay type(s)
     HUES65     HUES65 tracks for 1 assay type(s)
     HUES64     HUES64 tracks for 11 assay type(s)
     HUES63     HUES63 tracks for 1 assay type(s)
     HUES62     HUES62 tracks for 1 assay type(s)
     HUES6 Derived Embryoid Body Cultured Cells     HUES6 Derived Embryoid Body Cultured Cells tracks for 1 assay type(s)
     HUES6     HUES6 tracks for 9 assay type(s)
     HUES53     HUES53 tracks for 1 assay type(s)
     HUES49     HUES49 tracks for 1 assay type(s)
     HUES48     HUES48 tracks for 9 assay type(s)
     HUES45 Derived Embryoid Body Cultured Cells     HUES45 Derived Embryoid Body Cultured Cells tracks for 1 assay type(s)
     HUES45     HUES45 tracks for 1 assay type(s)
     HUES44     HUES44 tracks for 1 assay type(s)
     HUES3 Derived Embryoid Body Cultured Cells     HUES3 Derived Embryoid Body Cultured Cells tracks for 1 assay type(s)
     HUES3     HUES3 tracks for 1 assay type(s)
     HUES28     HUES28 tracks for 1 assay type(s)
     HUES13     HUES13 tracks for 1 assay type(s)
     HUES1 Derived Embryoid Body Cultured Cells     HUES1 Derived Embryoid Body Cultured Cells tracks for 1 assay type(s)
     HUES1     HUES1 tracks for 1 assay type(s)
     hESC Derived CD56+ Mesoderm Cultured Cells     hESC Derived CD56+ Mesoderm Cultured Cells tracks for 9 assay type(s)
     hESC Derived CD56+ Ectoderm Cultured Cells     hESC Derived CD56+ Ectoderm Cultured Cells tracks for 9 assay type(s)
     hESC Derived CD184+ Endoderm Cultured Cells     hESC Derived CD184+ Endoderm Cultured Cells tracks for 10 assay type(s)
     hESC Derived CD184 Endoderm Cultured Cells     hESC Derived CD184 Endoderm Cultured Cells tracks for 1 assay type(s)
     Heart     Heart tracks for 1 assay type(s)
     H9 Derived Neuronal Progenitor Cultured Cells     H9 Derived Neuronal Progenitor Cultured Cells tracks for 7 assay type(s)
     H9 Derived Neuronal Progenitor Cultured Cells     H9 Derived Neuronal Progenitor Cultured Cells tracks for 1 assay type(s)
     H9 Derived Neuron Cultured Cells     H9 Derived Neuron Cultured Cells tracks for 1 assay type(s)
     H9 Derived Neuron Cultured Cells     H9 Derived Neuron Cultured Cells tracks for 6 assay type(s)
     H9 Derived Neuron Cultured Cells     H9 Derived Neuron Cultured Cells tracks for 1 assay type(s)
     H9 Derived Embryoid Body Cultured Cells     H9 Derived Embryoid Body Cultured Cells tracks for 1 assay type(s)
     H9 Cell line     H9 Cell line tracks for 32 assay type(s)
     H1Es     H1Es tracks for 34 assay type(s)
     H1-BMP4     H1-BMP4 tracks for 2 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells r2b     H1 Derived Neuronal Progenitor Cultured Cells r2b tracks for 1 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells r2a     H1 Derived Neuronal Progenitor Cultured Cells r2a tracks for 1 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells r1c     H1 Derived Neuronal Progenitor Cultured Cells r1c tracks for 1 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells r1b     H1 Derived Neuronal Progenitor Cultured Cells r1b tracks for 1 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells r1a     H1 Derived Neuronal Progenitor Cultured Cells r1a tracks for 1 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells     H1 Derived Neuronal Progenitor Cultured Cells tracks for 2 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells     H1 Derived Neuronal Progenitor Cultured Cells tracks for 23 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells     H1 Derived Neuronal Progenitor Cultured Cells tracks for 1 assay type(s)
     H1 Derived Mesenchymal Stem Cells     H1 Derived Mesenchymal Stem Cells tracks for 25 assay type(s)
     H1 Derived Embryoid Body Cultured Cells     H1 Derived Embryoid Body Cultured Cells tracks for 1 assay type(s)
     H1 BMP4 Derived Trophoblast Cultured Cells     H1 BMP4 Derived Trophoblast Cultured Cells tracks for 26 assay type(s)
     H1 BMP4 Derived Trophoblast Cultured Cells     H1 BMP4 Derived Trophoblast Cultured Cells tracks for 2 assay type(s)
     H1 BMP4 Derived Mesendoderm Cultured Cells     H1 BMP4 Derived Mesendoderm Cultured Cells tracks for 1 assay type(s)
     H1 BMP4 Derived Mesendoderm Cultured Cells     H1 BMP4 Derived Mesendoderm Cultured Cells tracks for 5 assay type(s)
     H1 BMP4 Derived Mesendoderm Cultured Cells     H1 BMP4 Derived Mesendoderm Cultured Cells tracks for 18 assay type(s)
     Gastric     Gastric tracks for 10 assay type(s)
     Fibroblasts Fetal Skin Upper Back     Fibroblasts Fetal Skin Upper Back tracks for 1 assay type(s)
     Fibroblasts Fetal Skin Scalp     Fibroblasts Fetal Skin Scalp tracks for 2 assay type(s)
     Fibroblasts Fetal Skin Quadriceps Right     Fibroblasts Fetal Skin Quadriceps Right tracks for 1 assay type(s)
     Fibroblasts Fetal Skin Quadriceps Left     Fibroblasts Fetal Skin Quadriceps Left tracks for 1 assay type(s)
     Fibroblasts Fetal Skin Biceps Right     Fibroblasts Fetal Skin Biceps Right tracks for 1 assay type(s)
     Fibroblasts Fetal Skin Biceps Left     Fibroblasts Fetal Skin Biceps Left tracks for 1 assay type(s)
     Fibroblasts Fetal Skin Back     Fibroblasts Fetal Skin Back tracks for 2 assay type(s)
     Fibroblasts Fetal Skin Abdomen     Fibroblasts Fetal Skin Abdomen tracks for 2 assay type(s)
     Fetal Thymus     Fetal Thymus tracks for 10 assay type(s)
     Fetal Testes     Fetal Testes tracks for 1 assay type(s)
     Fetal Stomach     Fetal Stomach tracks for 8 assay type(s)
     Fetal Spleen     Fetal Spleen tracks for 1 assay type(s)
     Fetal Spinal Cord     Fetal Spinal Cord tracks for 1 assay type(s)
     Fetal Spinal Cord     Fetal Spinal Cord tracks for 2 assay type(s)
     Fetal Skin     Fetal Skin tracks for 1 assay type(s)
     Fetal Renal Pelvis Right     Fetal Renal Pelvis Right tracks for 1 assay type(s)
     Fetal Renal Pelvis Left     Fetal Renal Pelvis Left tracks for 1 assay type(s)
     Fetal Renal Pelvis     Fetal Renal Pelvis tracks for 1 assay type(s)
     Fetal Renal Cortex Right     Fetal Renal Cortex Right tracks for 1 assay type(s)
     Fetal Renal Cortex Left     Fetal Renal Cortex Left tracks for 1 assay type(s)
     Fetal Renal Cortex     Fetal Renal Cortex tracks for 1 assay type(s)
     Fetal Placenta     Fetal Placenta tracks for 8 assay type(s)
     Fetal Ovary     Fetal Ovary tracks for 2 assay type(s)
     Fetal Muscle Upper Trunk     Fetal Muscle Upper Trunk tracks for 1 assay type(s)
     Fetal Muscle Upper Limb Skeletal     Fetal Muscle Upper Limb Skeletal tracks for 2 assay type(s)
     Fetal Muscle Trunk     Fetal Muscle Trunk tracks for 9 assay type(s)
     Fetal Muscle Lower Limb Skeletal     Fetal Muscle Lower Limb Skeletal tracks for 2 assay type(s)
     Fetal Muscle Leg     Fetal Muscle Leg tracks for 10 assay type(s)
     Fetal Muscle Back     Fetal Muscle Back tracks for 2 assay type(s)
     Fetal Muscle Arm     Fetal Muscle Arm tracks for 3 assay type(s)
     Fetal Lung Right     Fetal Lung Right tracks for 2 assay type(s)
     Fetal Lung Left     Fetal Lung Left tracks for 2 assay type(s)
     Fetal Lung     Fetal Lung tracks for 10 assay type(s)
     Fetal Kidney Right     Fetal Kidney Right tracks for 1 assay type(s)
     Fetal Kidney Left     Fetal Kidney Left tracks for 1 assay type(s)
     Fetal Kidney     Fetal Kidney tracks for 9 assay type(s)
     Fetal Intestine Small     Fetal Intestine Small tracks for 9 assay type(s)
     Fetal Intestine Large     Fetal Intestine Large tracks for 9 assay type(s)
     Fetal Heart     Fetal Heart tracks for 10 assay type(s)
     Fetal Brain     Fetal Brain tracks for 14 assay type(s)
     Fetal Adrenal Gland     Fetal Adrenal Gland tracks for 8 assay type(s)
     Esophagus     Esophagus tracks for 9 assay type(s)
     ES-WA7     ES-WA7 tracks for 8 assay type(s)
     ES-I3     ES-I3 tracks for 8 assay type(s)
     Duodenum Smooth Muscle     Duodenum Smooth Muscle tracks for 7 assay type(s)
     Duodenum Mucosa     Duodenum Mucosa tracks for 9 assay type(s)
     Colonic Mucosa     Colonic Mucosa tracks for 9 assay type(s)
     Colon Smooth Muscle     Colon Smooth Muscle tracks for 9 assay type(s)
     Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells     Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells tracks for 9 assay type(s)
     CD8 Primary Cells     CD8 Primary Cells tracks for 7 assay type(s)
     CD8 Naive Primary Cells     CD8 Naive Primary Cells tracks for 12 assay type(s)
     CD8 Memory Primary Cells     CD8 Memory Primary Cells tracks for 7 assay type(s)
     CD56 Primary Cells     CD56 Primary Cells tracks for 8 assay type(s)
     CD4+ CD25int CD127+ Tmem Primary Cells     CD4+ CD25int CD127+ Tmem Primary Cells tracks for 7 assay type(s)
     CD4+ CD25int CD127+ Tmem Primary Cells     CD4+ CD25int CD127+ Tmem Primary Cells tracks for 4 assay type(s)
     CD4+ CD25int CD127 Tmem Primary Cells     CD4+ CD25int CD127 Tmem Primary Cells tracks for 3 assay type(s)
     CD4+ CD25- Th Primary Cells     CD4+ CD25- Th Primary Cells tracks for 6 assay type(s)
     CD4+ CD25- Th Primary Cells     CD4+ CD25- Th Primary Cells tracks for 7 assay type(s)
     CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells     CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells tracks for 7 assay type(s)
     CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells     CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells tracks for 7 assay type(s)
     CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells     CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells tracks for 2 assay type(s)
     CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells     CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells tracks for 6 assay type(s)
     CD4+ CD25- IL17 PMA-Ionomcyin stimulated Th17 Primary Cells     CD4+ CD25- IL17 PMA-Ionomcyin stimulated Th17 Primary Cells tracks for 5 assay type(s)
     CD4+ CD25- CD45RO+ Memory Primary Cells     CD4+ CD25- CD45RO+ Memory Primary Cells tracks for 6 assay type(s)
     CD4+ CD25- CD45RO Memory Primary Cells     CD4+ CD25- CD45RO Memory Primary Cells tracks for 7 assay type(s)
     CD4+ CD25- CD45RA+ Naive Primary Cells     CD4+ CD25- CD45RA+ Naive Primary Cells tracks for 6 assay type(s)
     CD4+ CD25- CD45RA+ Naive Primary Cells     CD4+ CD25- CD45RA+ Naive Primary Cells tracks for 1 assay type(s)
     CD4+ CD25- CD45RA Naive Primary Cells     CD4+ CD25- CD45RA Naive Primary Cells tracks for 6 assay type(s)
     CD4+ CD25+ CD127- Treg Primary Cells     CD4+ CD25+ CD127- Treg Primary Cells tracks for 7 assay type(s)
     CD4+ CD25+ CD127- Treg Primary Cells     CD4+ CD25+ CD127- Treg Primary Cells tracks for 6 assay type(s)
     CD4 Primary Cells     CD4 Primary Cells tracks for 5 assay type(s)
     CD4 Naive Primary Cells     CD4 Naive Primary Cells tracks for 11 assay type(s)
     CD4 Memory Primary Cells     CD4 Memory Primary Cells tracks for 11 assay type(s)
     CD34 Primary Cells     CD34 Primary Cells tracks for 7 assay type(s)
     CD34 Cultured Cells     CD34 Cultured Cells tracks for 6 assay type(s)
     CD3 Primary Cells     CD3 Primary Cells tracks for 10 assay type(s)
     CD20 Primary Cells     CD20 Primary Cells tracks for 1 assay type(s)
     CD19 Primary Cells     CD19 Primary Cells tracks for 9 assay type(s)
     CD15 Primary Cells     CD15 Primary Cells tracks for 7 assay type(s)
     CD14 Primary Cells     CD14 Primary Cells tracks for 8 assay type(s)
     Breast vHMEC     Breast vHMEC tracks for 12 assay type(s)
     Breast Stem Cells     Breast Stem Cells tracks for 5 assay type(s)
     Breast Myoepithelial Cells     Breast Myoepithelial Cells tracks for 12 assay type(s)
     Breast Luminal Epithelial Cells     Breast Luminal Epithelial Cells tracks for 10 assay type(s)
     Breast Fibroblast Primary Cells     Breast Fibroblast Primary Cells tracks for 7 assay type(s)
     Brain Substantia Nigra     Brain Substantia Nigra tracks for 9 assay type(s)
     Brain Mid Frontal Lobe     Brain Mid Frontal Lobe tracks for 9 assay type(s)
     Brain Inferior Temporal Lobe     Brain Inferior Temporal Lobe tracks for 9 assay type(s)
     Brain Hippocampus Middle     Brain Hippocampus Middle tracks for 10 assay type(s)
     Brain Germinal Matrix     Brain Germinal Matrix tracks for 10 assay type(s)
     Brain Cingulate Gyrus     Brain Cingulate Gyrus tracks for 9 assay type(s)
     Brain Cerebellum     Brain Cerebellum tracks for 1 assay type(s)
     Brain Anterior Caudate     Brain Anterior Caudate tracks for 9 assay type(s)
     Brain Angular Gyrus     Brain Angular Gyrus tracks for 9 assay type(s)
     Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells     Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells tracks for 9 assay type(s)
     Bladder     Bladder tracks for 5 assay type(s)
     Aorta     Aorta tracks for 8 assay type(s)
     Adult Liver     Adult Liver tracks for 10 assay type(s)
     Adult Kidney     Adult Kidney tracks for 8 assay type(s)
     Adrenal Gland     Adrenal Gland tracks for 7 assay type(s)
     Adipose Tissue     Adipose Tissue tracks for 4 assay type(s)
     Adipose Nuclei     Adipose Nuclei tracks for 8 assay type(s)
     Adipose Derived Mesenchymal Stem Cell Cultured Cells     Adipose Derived Mesenchymal Stem Cell Cultured Cells tracks for 7 assay type(s)
Assay Summary Assay Summary
     smRNA-Seq Summary     Roadmap Epigenome smRNA-Seq Summary for 15 sample type(s)
     RRBS Summary     Roadmap Epigenome RRBS Summary for 70 sample type(s)
     mRNA-Seq Summary     Roadmap Epigenome mRNA-Seq Summary for 80 sample type(s)
     MRE-Seq Summary     Roadmap Epigenome MRE-Seq Summary for 18 sample type(s)
     MeDIP-Seq Summary     Roadmap Epigenome MeDIP-Seq Summary for 19 sample type(s)
     Input Summary     Roadmap Epigenome Input Summary for 139 sample type(s)
     H4K91ac Summary     Roadmap Epigenome H4K91ac Summary for 6 sample type(s)
     H4K8ac Summary     Roadmap Epigenome H4K8ac Summary for 7 sample type(s)
     H4K5ac Summary     Roadmap Epigenome H4K5ac Summary for 3 sample type(s)
     H4K20me1 Summary     Roadmap Epigenome H4K20me1 Summary for 3 sample type(s)
     H4K12ac Summary     Roadmap Epigenome H4K12ac Summary for 1 sample type(s)
     H3T11ph Summary     Roadmap Epigenome H3T11ph Summary for 1 sample type(s)
     H3K9me3 Summary     Roadmap Epigenome H3K9me3 Summary for 128 sample type(s)
     H3K9me1 Summary     Roadmap Epigenome H3K9me1 Summary for 1 sample type(s)
     H3K9ac Summary     Roadmap Epigenome H3K9ac Summary for 50 sample type(s)
     H3K79me2 Summary     Roadmap Epigenome H3K79me2 Summary for 5 sample type(s)
     H3K79me1 Summary     Roadmap Epigenome H3K79me1 Summary for 7 sample type(s)
     H3K56ac Summary     Roadmap Epigenome H3K56ac Summary for 3 sample type(s)
     H3K4me3 Summary     Roadmap Epigenome H3K4me3 Summary for 121 sample type(s)
     H3K4me2 Summary     Roadmap Epigenome H3K4me2 Summary for 8 sample type(s)
     H3K4me1 Summary     Roadmap Epigenome H3K4me1 Summary for 126 sample type(s)
     H3K4ac Summary     Roadmap Epigenome H3K4ac Summary for 8 sample type(s)
     H3K36me3 Summary     Roadmap Epigenome H3K36me3 Summary for 131 sample type(s)
     H3K27me3 Summary     Roadmap Epigenome H3K27me3 Summary for 126 sample type(s)
     H3K27ac Summary     Roadmap Epigenome H3K27ac Summary for 96 sample type(s)
     H3K23me2 Summary     Roadmap Epigenome H3K23me2 Summary for 2 sample type(s)
     H3K23ac Summary     Roadmap Epigenome H3K23ac Summary for 8 sample type(s)
     H3K18ac Summary     Roadmap Epigenome H3K18ac Summary for 8 sample type(s)
     H3K14ac Summary     Roadmap Epigenome H3K14ac Summary for 6 sample type(s)
     H2BK5ac Summary     Roadmap Epigenome H2BK5ac Summary for 7 sample type(s)
     H2BK20ac Summary     Roadmap Epigenome H2BK20ac Summary for 3 sample type(s)
     H2BK15ac Summary     Roadmap Epigenome H2BK15ac Summary for 5 sample type(s)
     H2BK12ac Summary     Roadmap Epigenome H2BK12ac Summary for 6 sample type(s)
     H2BK120ac Summary     Roadmap Epigenome H2BK120ac Summary for 7 sample type(s)
     H2AK9ac Summary     Roadmap Epigenome H2AK9ac Summary for 1 sample type(s)
     H2AK5ac Summary     Roadmap Epigenome H2AK5ac Summary for 7 sample type(s)
     H2A.Z Summary     Roadmap Epigenome H2A.Z Summary for 7 sample type(s)
     DGF Summary     Roadmap Epigenome DGF Summary for 21 sample type(s)
     ChromatinAccessibility Summary     Roadmap Epigenome ChromatinAccessibility Summary for 89 sample type(s)
     Bisulfite-Seq Summary     Roadmap Epigenome Bisulfite-Seq Summary for 48 sample type(s)
Sample Summary Sample Summary
     UCSF-4star Summary     Roadmap Epigenome UCSF-4star Summary for 8 assay type(s)
     UCSF-4Star Summary     Roadmap Epigenome UCSF-4Star Summary for 6 assay type(s)
     Treg Primary Cells Summary     Roadmap Epigenome Treg Primary Cells Summary for 5 assay type(s)
     Thymus Summary     Roadmap Epigenome Thymus Summary for 7 assay type(s)
     Th17 Primary Cells Summary     Roadmap Epigenome Th17 Primary Cells Summary for 2 assay type(s)
     Testis Spermatozoa Primary Cells Summary     Roadmap Epigenome Testis Spermatozoa Primary Cells Summary for 1 assay type(s)
     Stomach Smooth Muscle Summary     Roadmap Epigenome Stomach Smooth Muscle Summary for 9 assay type(s)
     Stomach Mucosa Summary     Roadmap Epigenome Stomach Mucosa Summary for 8 assay type(s)
     StM Summary     Roadmap Epigenome StM Summary for 7 assay type(s)
     Spleen Summary     Roadmap Epigenome Spleen Summary for 9 assay type(s)
     Small Intestine Summary     Roadmap Epigenome Small Intestine Summary for 10 assay type(s)
     Skeletal Muscle Summary     Roadmap Epigenome Skeletal Muscle Summary for 2 assay type(s)
     Sigmoid Colon Summary     Roadmap Epigenome Sigmoid Colon Summary for 9 assay type(s)
     Right Ventricle Summary     Roadmap Epigenome Right Ventricle Summary for 8 assay type(s)
     Right Atrium Summary     Roadmap Epigenome Right Atrium Summary for 7 assay type(s)
     Rectal Smooth Muscle Summary     Roadmap Epigenome Rectal Smooth Muscle Summary for 9 assay type(s)
     Rectal Mucosa Summary     Roadmap Epigenome Rectal Mucosa Summary for 9 assay type(s)
     Psoas Muscle Summary     Roadmap Epigenome Psoas Muscle Summary for 9 assay type(s)
     Primary Fibroblast Summary     Roadmap Epigenome Primary Fibroblast Summary for 1 assay type(s)
     Placenta Villi Summary     Roadmap Epigenome Placenta Villi Summary for 1 assay type(s)
     Placenta Trophoblast Primary Cells Summary     Roadmap Epigenome Placenta Trophoblast Primary Cells Summary for 1 assay type(s)
     Placenta Chorion Smooth Summary     Roadmap Epigenome Placenta Chorion Smooth Summary for 7 assay type(s)
     Placenta Basal Plate Summary     Roadmap Epigenome Placenta Basal Plate Summary for 1 assay type(s)
     Placenta Amnion Summary     Roadmap Epigenome Placenta Amnion Summary for 8 assay type(s)
     PFKPC Summary     Roadmap Epigenome PFKPC Summary for 5 assay type(s)
     Peripheral Blood Mononuclear Primary Cells Summary     Roadmap Epigenome Peripheral Blood Mononuclear Primary Cells Summary for 9 assay type(s)
     PenisM Summary     Roadmap Epigenome PenisM Summary for 1 assay type(s)
     PenisF Summary     Roadmap Epigenome PenisF Summary for 1 assay type(s)
     Penis Foreskin Melanocyte Primary Cells Summary     Roadmap Epigenome Penis Foreskin Melanocyte Primary Cells Summary for 13 assay type(s)
     Penis Foreskin Keratinocyte Primary Cells Summary     Roadmap Epigenome Penis Foreskin Keratinocyte Primary Cells Summary for 14 assay type(s)
     Penis Foreskin Fibroblast Primary Cells Summary     Roadmap Epigenome Penis Foreskin Fibroblast Primary Cells Summary for 13 assay type(s)
     PBM Summary     Roadmap Epigenome PBM Summary for 8 assay type(s)
     Pancreatic Islets Summary     Roadmap Epigenome Pancreatic Islets Summary for 10 assay type(s)
     Pancreas Summary     Roadmap Epigenome Pancreas Summary for 10 assay type(s)
     Ovary Summary     Roadmap Epigenome Ovary Summary for 8 assay type(s)
     Neurosphere Cultured Cells Ganglionic Eminence Derived Summary     Roadmap Epigenome Neurosphere Cultured Cells Ganglionic Eminence Derived Summary for 12 assay type(s)
     Neurosphere Cultured Cells Cortex Derived Summary     Roadmap Epigenome Neurosphere Cultured Cells Cortex Derived Summary for 11 assay type(s)
     Muscle Satellite Cultured Cells Summary     Roadmap Epigenome Muscle Satellite Cultured Cells Summary for 8 assay type(s)
     Mobilized CD8 Primary Cells Summary     Roadmap Epigenome Mobilized CD8 Primary Cells Summary for 1 assay type(s)
     Mobilized CD4 Primary Cells Summary     Roadmap Epigenome Mobilized CD4 Primary Cells Summary for 2 assay type(s)
     Mobilized CD34 Primary Cells Summary     Roadmap Epigenome Mobilized CD34 Primary Cells Summary for 2 assay type(s)
     Mobilized CD3 Primary Cells Summary     Roadmap Epigenome Mobilized CD3 Primary Cells Summary for 1 assay type(s)
     Mobiled CD34 Summary     Roadmap Epigenome Mobiled CD34 Summary for 10 assay type(s)
     Mesenchymal Stem Cell Derived Adipocyte Cultured Cells Summary     Roadmap Epigenome Mesenchymal Stem Cell Derived Adipocyte Cultured Cells Summary for 7 assay type(s)
     Lung Summary     Roadmap Epigenome Lung Summary for 8 assay type(s)
     Left Ventricle Summary     Roadmap Epigenome Left Ventricle Summary for 9 assay type(s)
     iPS27e Summary     Roadmap Epigenome iPS27e Summary for 1 assay type(s)
     iPS27b Summary     Roadmap Epigenome iPS27b Summary for 1 assay type(s)
     iPS20b Summary     Roadmap Epigenome iPS20b Summary for 9 assay type(s)
     iPS18c Summary     Roadmap Epigenome iPS18c Summary for 7 assay type(s)
     iPS18b Summary     Roadmap Epigenome iPS18b Summary for 2 assay type(s)
     iPS18a Summary     Roadmap Epigenome iPS18a Summary for 9 assay type(s)
     iPS17b Summary     Roadmap Epigenome iPS17b Summary for 1 assay type(s)
     iPS17a Summary     Roadmap Epigenome iPS17a Summary for 1 assay type(s)
     iPS15b Summary     Roadmap Epigenome iPS15b Summary for 8 assay type(s)
     iPS11c Summary     Roadmap Epigenome iPS11c Summary for 1 assay type(s)
     iPS11b Summary     Roadmap Epigenome iPS11b Summary for 1 assay type(s)
     iPS11a Summary     Roadmap Epigenome iPS11a Summary for 3 assay type(s)
     iPS-DF.6.9 Summary     Roadmap Epigenome iPS-DF.6.9 Summary for 1 assay type(s)
     iPS-DF.19.11 Summary     Roadmap Epigenome iPS-DF.19.11 Summary for 1 assay type(s)
     iPS DF 6 9 Summary     Roadmap Epigenome iPS DF 6 9 Summary for 8 assay type(s)
     iPS DF 4 7 Summary     Roadmap Epigenome iPS DF 4 7 Summary for 1 assay type(s)
     iPS DF 19 Summary     Roadmap Epigenome iPS DF 19 Summary for 1 assay type(s)
     iPS DF 19 7 Summary     Roadmap Epigenome iPS DF 19 7 Summary for 1 assay type(s)
     iPS DF 19 11 Summary     Roadmap Epigenome iPS DF 19 11 Summary for 8 assay type(s)
     IMR90 Summary     Roadmap Epigenome IMR90 Summary for 33 assay type(s)
     HUES9 Summary     Roadmap Epigenome HUES9 Summary for 1 assay type(s)
     HUES8 Summary     Roadmap Epigenome HUES8 Summary for 1 assay type(s)
     HUES66 Summary     Roadmap Epigenome HUES66 Summary for 1 assay type(s)
     HUES65 Summary     Roadmap Epigenome HUES65 Summary for 1 assay type(s)
     HUES64 Summary     Roadmap Epigenome HUES64 Summary for 11 assay type(s)
     HUES63 Summary     Roadmap Epigenome HUES63 Summary for 1 assay type(s)
     HUES62 Summary     Roadmap Epigenome HUES62 Summary for 1 assay type(s)
     HUES6 Summary     Roadmap Epigenome HUES6 Summary for 9 assay type(s)
     HUES6 Derived Embryoid Body Cultured Cells Summary     Roadmap Epigenome HUES6 Derived Embryoid Body Cultured Cells Summary for 1 assay type(s)
     HUES53 Summary     Roadmap Epigenome HUES53 Summary for 1 assay type(s)
     HUES49 Summary     Roadmap Epigenome HUES49 Summary for 1 assay type(s)
     HUES48 Summary     Roadmap Epigenome HUES48 Summary for 9 assay type(s)
     HUES45 Summary     Roadmap Epigenome HUES45 Summary for 1 assay type(s)
     HUES45 Derived Embryoid Body Cultured Cells Summary     Roadmap Epigenome HUES45 Derived Embryoid Body Cultured Cells Summary for 1 assay type(s)
     HUES44 Summary     Roadmap Epigenome HUES44 Summary for 1 assay type(s)
     HUES3 Summary     Roadmap Epigenome HUES3 Summary for 1 assay type(s)
     HUES3 Derived Embryoid Body Cultured Cells Summary     Roadmap Epigenome HUES3 Derived Embryoid Body Cultured Cells Summary for 1 assay type(s)
     HUES28 Summary     Roadmap Epigenome HUES28 Summary for 1 assay type(s)
     HUES13 Summary     Roadmap Epigenome HUES13 Summary for 1 assay type(s)
     HUES1 Summary     Roadmap Epigenome HUES1 Summary for 1 assay type(s)
     HUES1 Derived Embryoid Body Cultured Cells Summary     Roadmap Epigenome HUES1 Derived Embryoid Body Cultured Cells Summary for 1 assay type(s)
     hESC Derived CD56+ Mesoderm Cultured Cells Summary     Roadmap Epigenome hESC Derived CD56+ Mesoderm Cultured Cells Summary for 9 assay type(s)
     hESC Derived CD56+ Ectoderm Cultured Cells Summary     Roadmap Epigenome hESC Derived CD56+ Ectoderm Cultured Cells Summary for 9 assay type(s)
     hESC Derived CD184+ Endoderm Cultured Cells Summary     Roadmap Epigenome hESC Derived CD184+ Endoderm Cultured Cells Summary for 10 assay type(s)
     hESC Derived CD184 Endoderm Cultured Cells Summary     Roadmap Epigenome hESC Derived CD184 Endoderm Cultured Cells Summary for 1 assay type(s)
     Heart Summary     Roadmap Epigenome Heart Summary for 1 assay type(s)
     HDNP Summary     Roadmap Epigenome HDNP Summary for 1 assay type(s)
     HDN Summary     Roadmap Epigenome HDN Summary for 1 assay type(s)
     H9 Derived Neuronal Progenitor Cultured Cells Summary     Roadmap Epigenome H9 Derived Neuronal Progenitor Cultured Cells Summary for 8 assay type(s)
     H9 Derived Neuron Cultured Cells Summary     Roadmap Epigenome H9 Derived Neuron Cultured Cells Summary for 7 assay type(s)
     H9 Derived Embryoid Body Cultured Cells Summary     Roadmap Epigenome H9 Derived Embryoid Body Cultured Cells Summary for 1 assay type(s)
     H9 Cell line Summary     Roadmap Epigenome H9 Cell line Summary for 32 assay type(s)
     H1Es Summary     Roadmap Epigenome H1Es Summary for 34 assay type(s)
     H1DNP Summary     Roadmap Epigenome H1DNP Summary for 2 assay type(s)
     H1-BMP4 Summary     Roadmap Epigenome H1-BMP4 Summary for 2 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells Summary     Roadmap Epigenome H1 Derived Neuronal Progenitor Cultured Cells Summary for 23 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells r2b Summary     Roadmap Epigenome H1 Derived Neuronal Progenitor Cultured Cells r2b Summary for 1 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells r2a Summary     Roadmap Epigenome H1 Derived Neuronal Progenitor Cultured Cells r2a Summary for 1 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells r1c Summary     Roadmap Epigenome H1 Derived Neuronal Progenitor Cultured Cells r1c Summary for 1 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells r1b Summary     Roadmap Epigenome H1 Derived Neuronal Progenitor Cultured Cells r1b Summary for 1 assay type(s)
     H1 Derived Neuronal Progenitor Cultured Cells r1a Summary     Roadmap Epigenome H1 Derived Neuronal Progenitor Cultured Cells r1a Summary for 1 assay type(s)
     H1 Derived Mesenchymal Stem Cells Summary     Roadmap Epigenome H1 Derived Mesenchymal Stem Cells Summary for 25 assay type(s)
     H1 Derived Embryoid Body Cultured Cells Summary     Roadmap Epigenome H1 Derived Embryoid Body Cultured Cells Summary for 1 assay type(s)
     H1 BMP4 Trophoblast Summary     Roadmap Epigenome H1 BMP4 Trophoblast Summary for 11 assay type(s)
     H1 BMP4 Mesendoderm Summary     Roadmap Epigenome H1 BMP4 Mesendoderm Summary for 14 assay type(s)
     H1 BMP4 Derived Trophoblast Cultured Cells Summary     Roadmap Epigenome H1 BMP4 Derived Trophoblast Cultured Cells Summary for 20 assay type(s)
     H1 BMP4 Derived Mesendoderm Cultured Cells Summary     Roadmap Epigenome H1 BMP4 Derived Mesendoderm Cultured Cells Summary for 8 assay type(s)
     Gastric Summary     Roadmap Epigenome Gastric Summary for 10 assay type(s)
     Fibroblasts Fetal Skin Upper Back Summary     Roadmap Epigenome Fibroblasts Fetal Skin Upper Back Summary for 1 assay type(s)
     Fibroblasts Fetal Skin Scalp Summary     Roadmap Epigenome Fibroblasts Fetal Skin Scalp Summary for 2 assay type(s)
     Fibroblasts Fetal Skin Quadriceps Right Summary     Roadmap Epigenome Fibroblasts Fetal Skin Quadriceps Right Summary for 1 assay type(s)
     Fibroblasts Fetal Skin Quadriceps Left Summary     Roadmap Epigenome Fibroblasts Fetal Skin Quadriceps Left Summary for 1 assay type(s)
     Fibroblasts Fetal Skin Biceps Right Summary     Roadmap Epigenome Fibroblasts Fetal Skin Biceps Right Summary for 1 assay type(s)
     Fibroblasts Fetal Skin Biceps Left Summary     Roadmap Epigenome Fibroblasts Fetal Skin Biceps Left Summary for 1 assay type(s)
     Fibroblasts Fetal Skin Back Summary     Roadmap Epigenome Fibroblasts Fetal Skin Back Summary for 2 assay type(s)
     Fibroblasts Fetal Skin Abdomen Summary     Roadmap Epigenome Fibroblasts Fetal Skin Abdomen Summary for 2 assay type(s)
     Fetal Thymus Summary     Roadmap Epigenome Fetal Thymus Summary for 10 assay type(s)
     Fetal Testes Summary     Roadmap Epigenome Fetal Testes Summary for 1 assay type(s)
     Fetal Stomach Summary     Roadmap Epigenome Fetal Stomach Summary for 8 assay type(s)
     Fetal Spleen Summary     Roadmap Epigenome Fetal Spleen Summary for 1 assay type(s)
     Fetal Spinal Cord Summary     Roadmap Epigenome Fetal Spinal Cord Summary for 2 assay type(s)
     Fetal Skin Summary     Roadmap Epigenome Fetal Skin Summary for 1 assay type(s)
     Fetal Renal Pelvis Summary     Roadmap Epigenome Fetal Renal Pelvis Summary for 1 assay type(s)
     Fetal Renal Pelvis Right Summary     Roadmap Epigenome Fetal Renal Pelvis Right Summary for 1 assay type(s)
     Fetal Renal Pelvis Left Summary     Roadmap Epigenome Fetal Renal Pelvis Left Summary for 1 assay type(s)
     Fetal Renal Cortex Summary     Roadmap Epigenome Fetal Renal Cortex Summary for 1 assay type(s)
     Fetal Renal Cortex Right Summary     Roadmap Epigenome Fetal Renal Cortex Right Summary for 1 assay type(s)
     Fetal Renal Cortex Left Summary     Roadmap Epigenome Fetal Renal Cortex Left Summary for 1 assay type(s)
     Fetal Placenta Summary     Roadmap Epigenome Fetal Placenta Summary for 8 assay type(s)
     Fetal Ovary Summary     Roadmap Epigenome Fetal Ovary Summary for 2 assay type(s)
     Fetal Muscle Upper Trunk Summary     Roadmap Epigenome Fetal Muscle Upper Trunk Summary for 1 assay type(s)
     Fetal Muscle Upper Limb Skeletal Summary     Roadmap Epigenome Fetal Muscle Upper Limb Skeletal Summary for 2 assay type(s)
     Fetal Muscle Trunk Summary     Roadmap Epigenome Fetal Muscle Trunk Summary for 9 assay type(s)
     Fetal Muscle Lower Limb Skeletal Summary     Roadmap Epigenome Fetal Muscle Lower Limb Skeletal Summary for 2 assay type(s)
     Fetal Muscle Leg Summary     Roadmap Epigenome Fetal Muscle Leg Summary for 10 assay type(s)
     Fetal Muscle Back Summary     Roadmap Epigenome Fetal Muscle Back Summary for 2 assay type(s)
     Fetal Muscle Arm Summary     Roadmap Epigenome Fetal Muscle Arm Summary for 3 assay type(s)
     Fetal Lung Summary     Roadmap Epigenome Fetal Lung Summary for 10 assay type(s)
     Fetal Lung Right Summary     Roadmap Epigenome Fetal Lung Right Summary for 2 assay type(s)
     Fetal Lung Left Summary     Roadmap Epigenome Fetal Lung Left Summary for 2 assay type(s)
     Fetal Kidney Summary     Roadmap Epigenome Fetal Kidney Summary for 9 assay type(s)
     Fetal Kidney Right Summary     Roadmap Epigenome Fetal Kidney Right Summary for 1 assay type(s)
     Fetal Kidney Left Summary     Roadmap Epigenome Fetal Kidney Left Summary for 1 assay type(s)
     Fetal Intestine Small Summary     Roadmap Epigenome Fetal Intestine Small Summary for 9 assay type(s)
     Fetal Intestine Large Summary     Roadmap Epigenome Fetal Intestine Large Summary for 9 assay type(s)
     Fetal Heart Summary     Roadmap Epigenome Fetal Heart Summary for 10 assay type(s)
     Fetal Brain Summary     Roadmap Epigenome Fetal Brain Summary for 14 assay type(s)
     Fetal Adrenal Gland Summary     Roadmap Epigenome Fetal Adrenal Gland Summary for 8 assay type(s)
     Esophagus Summary     Roadmap Epigenome Esophagus Summary for 9 assay type(s)
     ES-WA7 Summary     Roadmap Epigenome ES-WA7 Summary for 8 assay type(s)
     ES-I3 Summary     Roadmap Epigenome ES-I3 Summary for 8 assay type(s)
     Duodenum Smooth Muscle Summary     Roadmap Epigenome Duodenum Smooth Muscle Summary for 7 assay type(s)
     Duodenum Mucosa Summary     Roadmap Epigenome Duodenum Mucosa Summary for 9 assay type(s)
     Colonic Mucosa Summary     Roadmap Epigenome Colonic Mucosa Summary for 9 assay type(s)
     Colon Smooth Muscle Summary     Roadmap Epigenome Colon Smooth Muscle Summary for 9 assay type(s)
     Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Summary     Roadmap Epigenome Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Summary for 9 assay type(s)
     CD8 Primary Cells Summary     Roadmap Epigenome CD8 Primary Cells Summary for 7 assay type(s)
     CD8 Naive Primary Cells Summary     Roadmap Epigenome CD8 Naive Primary Cells Summary for 12 assay type(s)
     CD8 Memory Primary Cells Summary     Roadmap Epigenome CD8 Memory Primary Cells Summary for 7 assay type(s)
     CD56 Primary Cells Summary     Roadmap Epigenome CD56 Primary Cells Summary for 8 assay type(s)
     CD4+CD25-Tr Summary     Roadmap Epigenome CD4+CD25-Tr Summary for 6 assay type(s)
     CD4+CD25-Tm Summary     Roadmap Epigenome CD4+CD25-Tm Summary for 3 assay type(s)
     CD4+CD25-Th17 Summary     Roadmap Epigenome CD4+CD25-Th17 Summary for 5 assay type(s)
     CD4+CD25-Th Summary     Roadmap Epigenome CD4+CD25-Th Summary for 6 assay type(s)
     CD4+CD25-N Summary     Roadmap Epigenome CD4+CD25-N Summary for 6 assay type(s)
     CD4+CD25-MACS Summary     Roadmap Epigenome CD4+CD25-MACS Summary for 6 assay type(s)
     CD4+CD25-M Summary     Roadmap Epigenome CD4+CD25-M Summary for 7 assay type(s)
     CD4+ CD25int CD127+ Tmem Primary Cells Summary     Roadmap Epigenome CD4+ CD25int CD127+ Tmem Primary Cells Summary for 7 assay type(s)
     CD4+ CD25- Th Primary Cells Summary     Roadmap Epigenome CD4+ CD25- Th Primary Cells Summary for 7 assay type(s)
     CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells Summary     Roadmap Epigenome CD4+ CD25- IL17- PMA-Ionomycin stimulated MACS purified Th Primary Cells Summary for 7 assay type(s)
     CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells Summary     Roadmap Epigenome CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells Summary for 6 assay type(s)
     CD4+ CD25- CD45RO+ Memory Primary Cells Summary     Roadmap Epigenome CD4+ CD25- CD45RO+ Memory Primary Cells Summary for 6 assay type(s)
     CD4+ CD25- CD45RA+ Naive Primary Cells Summary     Roadmap Epigenome CD4+ CD25- CD45RA+ Naive Primary Cells Summary for 6 assay type(s)
     CD4+ CD25+ CD127- Treg Primary Cells Summary     Roadmap Epigenome CD4+ CD25+ CD127- Treg Primary Cells Summary for 7 assay type(s)
     CD4 Primary Cells Summary     Roadmap Epigenome CD4 Primary Cells Summary for 5 assay type(s)
     CD4 Naive Primary Cells Summary     Roadmap Epigenome CD4 Naive Primary Cells Summary for 11 assay type(s)
     CD4 Memory Primary Cells Summary     Roadmap Epigenome CD4 Memory Primary Cells Summary for 11 assay type(s)
     CD34 Primary Cells Summary     Roadmap Epigenome CD34 Primary Cells Summary for 7 assay type(s)
     CD34 Cultured Cells Summary     Roadmap Epigenome CD34 Cultured Cells Summary for 6 assay type(s)
     CD3 Primary Cells Summary     Roadmap Epigenome CD3 Primary Cells Summary for 10 assay type(s)
     CD20 Primary Cells Summary     Roadmap Epigenome CD20 Primary Cells Summary for 1 assay type(s)
     CD19 Primary Cells Summary     Roadmap Epigenome CD19 Primary Cells Summary for 9 assay type(s)
     CD15 Primary Cells Summary     Roadmap Epigenome CD15 Primary Cells Summary for 7 assay type(s)
     CD14 Primary Cells Summary     Roadmap Epigenome CD14 Primary Cells Summary for 8 assay type(s)
     Breast vHMEC Summary     Roadmap Epigenome Breast vHMEC Summary for 12 assay type(s)
     Breast Stem Cells Summary     Roadmap Epigenome Breast Stem Cells Summary for 5 assay type(s)
     Breast Myoepithelial Cells Summary     Roadmap Epigenome Breast Myoepithelial Cells Summary for 12 assay type(s)
     Breast Luminal Epithelial Cells Summary     Roadmap Epigenome Breast Luminal Epithelial Cells Summary for 10 assay type(s)
     Breast Fibroblast Primary Cells Summary     Roadmap Epigenome Breast Fibroblast Primary Cells Summary for 7 assay type(s)
     Brain Substantia Nigra Summary     Roadmap Epigenome Brain Substantia Nigra Summary for 9 assay type(s)
     Brain Mid Frontal Lobe Summary     Roadmap Epigenome Brain Mid Frontal Lobe Summary for 9 assay type(s)
     Brain Inferior Temporal Lobe Summary     Roadmap Epigenome Brain Inferior Temporal Lobe Summary for 9 assay type(s)
     Brain Hippocampus Middle Summary     Roadmap Epigenome Brain Hippocampus Middle Summary for 10 assay type(s)
     Brain Germinal Matrix Summary     Roadmap Epigenome Brain Germinal Matrix Summary for 10 assay type(s)
     Brain Cingulate Gyrus Summary     Roadmap Epigenome Brain Cingulate Gyrus Summary for 9 assay type(s)
     Brain Cerebellum Summary     Roadmap Epigenome Brain Cerebellum Summary for 1 assay type(s)
     Brain Anterior Caudate Summary     Roadmap Epigenome Brain Anterior Caudate Summary for 9 assay type(s)
     Brain Angular Gyrus Summary     Roadmap Epigenome Brain Angular Gyrus Summary for 9 assay type(s)
     Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Summary     Roadmap Epigenome Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Summary for 9 assay type(s)
     Bladder Summary     Roadmap Epigenome Bladder Summary for 5 assay type(s)
     Aorta Summary     Roadmap Epigenome Aorta Summary for 8 assay type(s)
     Adult Liver Summary     Roadmap Epigenome Adult Liver Summary for 10 assay type(s)
     Adult Kidney Summary     Roadmap Epigenome Adult Kidney Summary for 8 assay type(s)
     Adrenal Gland Summary     Roadmap Epigenome Adrenal Gland Summary for 7 assay type(s)
     Adipose Tissue Summary     Roadmap Epigenome Adipose Tissue Summary for 4 assay type(s)
     Adipose Nuclei Summary     Roadmap Epigenome Adipose Nuclei Summary for 8 assay type(s)
     Adipose Derived Mesenchymal Stem Cell Cultured Cells Summary     Roadmap Epigenome Adipose Derived Mesenchymal Stem Cell Cultured Cells Summary for 7 assay type(s)
Methylation Summary Methylation Summary
     RRBS Summary     Roadmap Epigenome RRBS Summary for 8 sample type(s)
     MRE-Seq Summary     Roadmap Epigenome MRE-Seq Summary for 18 sample type(s)
     MeDIP-Seq Summary     Roadmap Epigenome MeDIP-Seq Summary for 19 sample type(s)
     Bisulfite-Seq Summary     Roadmap Epigenome Bisulfite-Seq Summary for 36 sample type(s)
Roadmap Uniformly Signal Uniformly processed Signal from Roadmap Project
chromHMM chromHMM tracks from Roadmap
-   Hub: ENCODE Analysis Hub    
ENCODE Genome Segmentations Genome Segmentations based on ENCODE data
ENCODE RNA-seq ENCODE Long RNA-seq and Short RNA-seq Contigs and Signal
ENCODE Transcription Factors ENCODE Transcription Factor ChIP-seq Peaks and Signal based on Uniform processing pipeline
ENCODE DNase-seq ENCODE DNase-seq Peaks and Signal of Open Chromatin based on Uniform processing pipeline
ENCODE FAIRE ENCODE FAIRE-seq Peaks and Signal of Open Chromatin based on Uniform processing pipeline
ENCODE Histone Modifications ENCODE Histone Modification Peaks and Signal based on Uniform processing pipeline
-   Hub: DASHR small ncRNA Hub    
DASHR Called human sncRNA loci DASHR Called human small non-coding RNA loci
DASHR RNA annotation DASHR RNA annotation
DASHR smRNA-seq raw signal DASHR human smRNA-seq raw signal
-   Hub: LoweLab tRNA Hub    
ARM-Seq NatMeth2015 ARM-Seq Enhanced tRNA Sequencing for GM12878 and GM05372 human cell lines
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
p14 Fix Patches Reference Assembly Fix Patch Sequence Alignments
p14 Alt Haplotypes Reference Assembly Alternate Haplotype Sequence Alignments
Assembly Assembly from Fragments
BAC End Pairs BAC End Pairs
BU ORChID ORChID Predicted DNA Cleavage Sites from ENCODE/Boston Univ (Tullius lab)
Chromosome Band Chromosome Bands Localized by FISH Mapping Clones
deCODE Recomb deCODE Recombination maps, 10Kb bin size, October 2010
ENCODE Pilot Regions Used for ENCODE Pilot Project (1%)
Exome Probesets Exome Capture Probesets and Targeted Region
FISH Clones Clones Placed on Cytogenetic Map Using FISH
Fosmid End Pairs Fosmid End Pairs
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
GRC Incident GRC Incident Database
GRC Map Contigs Genome Reference Consortium Map Contigs
Hg18 Diff Contigs New to GRCh37/(hg19), Not Carried Forward from NCBI Build 36(hg18)
Hg38 Diff Contigs Dropped or Changed from GRCh37(hg19) to GRCh38(hg38)
Hi Seq Depth Regions of Exceptionally High Depth of Aligned Short Reads
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
liftOver & ReMap UCSC LiftOver and NCBI ReMap: Genome alignments to convert annotations to hg38
LRG Regions Locus Reference Genomic (LRG) / RefSeqGene Sequences Mapped to Feb. 2009 (GRCh37/hg19) Assembly
Map Contigs Physical Map Contigs
Mappability Mappability or Uniqueness of Reference Genome from ENCODE
Problematic Regions Problematic Regions for NGS or Sanger sequencing or very variable regions
Recomb Rate Recombination Rate from deCODE, Marshfield, or Genethon Maps (deCODE default)
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
STS Markers STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps
-   Genes and Gene Predictions    
updated GENCODE V47lift37 GENCODE V47lift37
NCBI RefSeq RefSeq genes from NCBI
Genes Archive Previous versions of GENCODE/UCSC Genes (knownGene)
     UCSC Genes 2013     Legacy UCSC Genes track (knownGene) from 2013
     GENCODE V45lift37     GENCODE V45lift37
CCDS Consensus CDS
CRISPR Targets CRISPR/Cas9 -NGG Targets, whole genome
Ensembl Genes Ensembl Genes
EvoFold EvoFold Predictions of RNA Secondary Structure
Exoniphy Exoniphy Human/Mouse/Rat/Dog
updated GENCODE Versions Container of all new and previous GENCODE releases
     GENCODE Genes V7     Gene Annotations from ENCODE/GENCODE Version 7
     GENCODE Genes V14     Gene Annotations from ENCODE/GENCODE Version 14
     GENCODE Genes V17     Gene Annotations from ENCODE/GENCODE Version 17
     GENCODE Genes V19     Gene Annotations from GENCODE Version 19
     GENCODE Gene V24lift37     Gene Annotations from GENCODE Version 24lift37
     GENCODE Gene V27lift37     Gene Annotations from GENCODE Version 27lift37
     GENCODE V28lift37     GENCODE lifted annotations from V28lift37 (Ensembl 92)
     GENCODE V31lift37     GENCODE lifted annotations from V31lift37 (Ensembl 97)
     GENCODE V33lift37     GENCODE lifted annotations from V33lift37 (Ensembl 99)
     GENCODE V34lift37     GENCODE lifted annotations from V34lift37 (Ensembl 100)
     GENCODE V35lift37     GENCODE lifted annotations from V35lift37 (Ensembl 101)
     GENCODE V36lift37     GENCODE lifted annotations from V36lift37 (Ensembl 102)
     GENCODE V37lift37     GENCODE lifted annotations from V37lift37 (Ensembl 103)
     GENCODE V38lift37     GENCODE lifted annotations from V38lift37 (Ensembl 104)
     GENCODE V39lift37     GENCODE lifted annotations from V39lift37 (Ensembl 105)
     GENCODE V40lift37     GENCODE lifted annotations from V40lift37 (Ensembl 106)
     GENCODE V41lift37     GENCODE lifted annotations from V41lift37 (Ensembl 107)
     GENCODE V42lift37     GENCODE lifted annotations from V42lift37 (Ensembl 108)
     GENCODE V43lift37     GENCODE lifted annotations from V43lift37 (Ensembl 109)
     GENCODE V44lift37     GENCODE lifted annotations from V44lift37 (Ensembl 110)
     GENCODE V45lift37     GENCODE lifted annotations from V45lift37 (Ensembl 111)
     GENCODE V46lift37     GENCODE lifted annotations from V46lift37 (Ensembl 112)
    new GENCODE V47lift37     GENCODE lifted annotations from V47lift37 (Ensembl 113)
H-Inv 7.0 H-Inv 7.0 Gene Predictions
HGNC HUGO Gene Nomenclature
IKMC Genes Mapped International Knockout Mouse Consortium Genes Mapped to Human Genome
lincRNAs Human Body Map lincRNAs and TUCP Transcripts
     lincRNA Transcripts     lincRNA and TUCP transcripts
     lincRNA RNA-Seq Reads     lincRNA RNA-Seq reads expression abundances
LRG Transcripts Locus Reference Genomic (LRG) / RefSeqGene Fixed Transcript Annotations
MGC/ORFeome Genes MGC/ORFeome Full ORF mRNA Clones
     ORFeome Clones     ORFeome Collaboration Gene Clones
     MGC Genes     Mammalian Gene Collection Full ORF mRNAs
Old UCSC Genes Previous Version of UCSC Genes
Other RefSeq Non-Human RefSeq Genes
Pfam in UCSC Gene Pfam Domains in UCSC Genes
Prediction Archive Gene Prediction Archive
     SIB Genes     Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs
     SGP Genes     SGP Gene Predictions Using Mouse/Human Homology
     N-SCAN     N-SCAN Gene Predictions
     Genscan Genes     Genscan Gene Predictions
     Geneid Genes     Geneid Gene Predictions
     AUGUSTUS     AUGUSTUS ab initio gene predictions v3.1
     AceView Genes     AceView Gene Models With Alt-Splicing
Retroposed Genes Retroposed Genes V5, Including Pseudogenes
sno/miRNA C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase
TransMap V5 TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
UCSC Alt Events Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes
UniProt UniProt SwissProt/TrEMBL Protein Annotations
Vega Genes Vega Annotations
Yale Pseudo60 Yale Pseudogenes based on Ensembl Release 60
-   Phenotype and Literature    
OMIM Online Mendelian Inheritance in Man
     OMIM Cyto Loci     OMIM Cytogenetic Loci Phenotypes - Gene Unknown
     OMIM Genes     OMIM Gene Phenotypes - Dark Green Can Be Disease-causing
     OMIM Alleles     OMIM Allelic Variant Phenotypes
Publications Publications: Sequences in Scientific Articles
AbSplice Scores Aberrant Splicing Prediction Scores
CADD 1.6 CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions
     CADD 1.6 Ins     CADD 1.6 Score: Insertions - label is length of insertion
     CADD 1.6 Del     CADD 1.6 Score: Deletions - label is length of deletion
     CADD 1.6     CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)
new CADD 1.7 CADD 1.7 Score for all single-basepair mutations and selected insertions/deletions
    new CADD 1.7 Ins     CADD 1.7 Score: Insertions - label is length of insertion
    new CADD 1.7 Del     CADD 1.7 Score: Deletions - label is length of deletion
    new CADD 1.7     CADD 1.7 Score for all possible single-basepair mutations (zoom in for scores)
new ClinGen ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity)
ClinGen CNVs Clinical Genome Resource (ClinGen) CNVs
ClinVar Variants ClinVar Variants
Constraint scores Human constraint scores
     MTR All Data     MTR - Missense Tolerance Ratio Scores all annotations
     MTR Scores     MTR - Missense Tolerance Ratio Scores by base
     MetaDome All Data     MetaDome - Tolerance Landscape score all annotations
     MetaDome     MetaDome - Tolerance Landscape score
     HMC     HMC - Homologous Missense Constraint Score on PFAM domains
     JARVIS     JARVIS: score to prioritize non-coding regions for disease relevance
Coriell CNVs Coriell Cell Line Copy Number Variants
COSMIC Regions Catalogue of Somatic Mutations in Cancer V82
COVID Data Container of SARS-CoV-2 data
     COVID Rare Harmful Var     Rare variants underlying COVID-19 severity and susceptibility from the COVID Human Genetics Effort
     COVID GWAS v3     GWAS meta-analyses from the COVID-19 Host Genetics Initiative
     COVID GWAS v4     COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020)
DECIPHER CNVs DECIPHER CNVs (not updated anymore - use the hg38 track)
DECIPHER SNVs DECIPHER SNVs (not updated anymore - use the hg38 track)
Development Delay Copy Number Variation Morbidity Map of Developmental Delay
Dosage Sensitivity pHaplo and pTriplo dosage sensitivity map from Collins et al 2022
GAD View Genetic Association Studies of Complex Diseases and Disorders
GenCC GenCC: The Gene Curation Coalition Annotations
Gene Interactions Protein Interactions from Curated Databases and Text-Mining
GeneReviews GeneReviews
GWAS Catalog NHGRI-EBI Catalog of Published Genome-Wide Association Studies
Haploinsufficiency Haploinsufficiency predictions for genes from DECIPHER
HGMD public Human Gene Mutation Database - Public Version Dec 2023
Lens Patents Lens PatSeq Patent Document Sequences
LOVD Variants LOVD: Leiden Open Variation Database Public Variants
MGI Mouse QTL MGI Mouse Quantitative Trait Loci Coarsely Mapped to Human
Orphanet Orphadata: Aggregated Data From Orphanet
PanelApp Genomics England PanelApp Diagnostics
Polygenic Risk Scores Polygenic Risk Scores
     PRS eMERGE     Polygenic Risk Scores from NHGRI Electronic Medical Records and Genomics (eMERGE) project
Prediction Scores Human Prediction Scores
     BayesDel     BayesDel - deleteriousness meta-score
REVEL Scores REVEL Pathogenicity Score for single-base coding mutations (zoom for exact score)
RGD Human QTL Human Quantitative Trait Locus from RGD
RGD Rat QTL Rat Quantitative Trait Locus from RGD Coarsely Mapped to Human
SNPedia SNPedia
new SpliceAI SpliceAI: Splice Variant Prediction Score
     SpliceAI indels (masked)     SpliceAI Indels (masked)
     SpliceAI SNVs (masked)     SpliceAI SNVs (masked)
     SpliceAI indels     SpliceAI Indels (unmasked)
     SpliceAI SNVs     SpliceAI SNVs (unmasked)
UniProt Variants UniProt/SwissProt Amino Acid Substitutions
Variants in Papers Genetic Variants mentioned in scientific publications
     Mastermind Variants     Genomenon Mastermind Variants extracted from full text publications
     Avada Variants     Avada Variants extracted from full text publications
Web Sequences DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research
-   mRNA and EST    
CGAP SAGE CGAP Long SAGE
Gene Bounds Gene Boundaries as Defined by RNA and Spliced EST Clusters
H-Inv H-Invitational Genes mRNA Alignments
Human ESTs Human ESTs Including Unspliced
Human mRNAs Human mRNAs from GenBank
Human RNA Editing Human RNA Editing from the DAtabase of RNa EDiting
Other ESTs Non-Human ESTs from GenBank
Other mRNAs Non-Human mRNAs from GenBank
Poly(A) Poly(A) Sites, Both Reported and Predicted
PolyA-Seq Poly(A)-sequencing from Merck Research Laboratories
SIB Alt-Splicing Alternative Splicing Graph from Swiss Institute of Bioinformatics
Spliced ESTs Human ESTs That Have Been Spliced
UniGene UniGene Alignments
-   Expression    
GTEx Gene V8 Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019)
Allen Brain Allen Brain Atlas Probes
Burge RNA-seq Burge Lab RNA-seq Aligned by GEM Mapper
CSHL Small RNA-seq Small RNA-seq from ENCODE/Cold Spring Harbor Lab
ENC Exon Array ENCODE Exon Array
     UW Affy Exon     Affymetrix Exon Array from ENCODE/University of Washington
     Duke Affy Exon     Affymetrix Exon Array from ENCODE/Duke
ENC ProtGeno ENCODE Proteogenomics
     UNC/BSU ProtGeno     Proteogenomics Hg19 Mapping from ENCODE/Univ. North Carolina/Boise State Univ.
     UNC/BSU ProtGenc     Proteogenomics Hg19 and GENCODE Mapping from ENCODE/Univ. North Carolina/Boise State Univ.
ENC RNA-seq ENCODE RNA-seq
     SYDH RNA-seq     RNA-seq from ENCODE/Stanford/Yale/USC/Harvard
     HAIB RNA-seq     RNA-seq from ENCODE/HAIB
     GIS RNA-seq     RNA-seq from ENCODE/Genome Institute of Singapore
     CSHL Long RNA-seq     Long RNA-seq from ENCODE/Cold Spring Harbor Lab
     Caltech RNA-seq     RNA-seq from ENCODE/Caltech
EPDnew Promoters Promoters from EPDnew human version 006
Affy Archive Affymetrix Archive
     Affy U133Plus2     Alignments of Affymetrix Consensus/Exemplars from HG-U133 Plus 2.0
     Affy U133     Alignments of Affymetrix Consensus/Exemplars from HG-U133
     Affy U95     Alignments of Affymetrix Consensus/Exemplars from HG-U95
     Affy RNA Loc     RNA Subcellular Localization by Tiling Microarray from ENCODE Affymetrix/CSHL
     Affy GNF1H     Alignments of Affymetrix Consensus/Exemplars from GNF1H
     Affy Exon Array     Affymetrix Human Exon Array Probes and Probesets
GIS RNA PET RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS
GNF Atlas 2 GNF Expression Atlas 2
GTEx Gene Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors)
GTEx Transcript Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors
GWIPS-viz Riboseq Ribosome Profiling from GWIPS-viz
Illumina WG-6 Alignments of Illumina WG-6 3.0 Probe Set
PeptideAtlas Peptide sequences identified from MS spectra of 971 samples by PeptideAtlas
qPCR Primers Human (hg19) Whole Transcriptome qPCR Primers
RIKEN CAGE Loc RNA Subcellular CAGE Localization from ENCODE/RIKEN
Sestan Brain Sestan Lab Human Brain Atlas Microarrays
-   Regulation    
ENCODE Regulation Integrated Regulation from ENCODE
     Txn Fac ChIP V2     Transcription Factor ChIP-seq from ENCODE (V2)
     Txn Factor ChIP     Transcription Factor ChIP-seq Clusters (161 factors) from ENCODE with Factorbook Motifs
     Txn Factr ChIP E3     Transcription Factor ChIP-seq Clusters (338 factors, 130 cell types) from ENCODE 3
     DNase Clusters     DNaseI Hypersensitivity Clusters in 125 cell types from ENCODE (V3)
     Layered H3K27Ac     H3K27Ac Mark (Often Found Near Active Regulatory Elements) on 7 cell lines from ENCODE
     Layered H3K4Me3     H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE
     Layered H3K4Me1     H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE
     Transcription     Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE
CD34 DnaseI Eur. Inst. Oncology/J. C. Venter Inst. Nuclease Accessible Sites
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
ENC Chromatin ENCODE Chromatin Interactions
     UW 5C    DownloadsChromatin Interactions by 5C from ENCODE/University of Washington
     UMass 5C     Chromatin Interactions by 5C from ENCODE/Dekker Univ. Mass.
     GIS ChIA-PET     Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan
ENC DNA Methyl ENCODE DNA Methylation
     HAIB Methyl450     CpG Methylation by Methyl 450K Bead Arrays from ENCODE/HAIB
     HAIB Methyl RRBS     DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha
ENC DNase/FAIRE ENCODE Open Chromatin by DNaseI HS and FAIRE
     UW DNaseI HS     DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
     UW DNaseI DGF     DNaseI Digital Genomic Footprinting from ENCODE/University of Washington
     UNC FAIRE     Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill)
     Duke DNaseI HS     Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)
     Open Chrom Synth     DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom(Duke/UNC/UTA)
     Uniform DNaseI HS     DNaseI Hypersensitivity Uniform Peaks from ENCODE/Analysis
     Master DNaseI HS     DNaseI Hypersensitive Site Master List (125 cell types) from ENCODE/Analysis
ENC Histone ENCODE Histone Modification
     UW Histone     Histone Modifications by ChIP-seq from ENCODE/University of Washington
     SYDH Histone     Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard
     Broad Histone     Histone Modifications by ChIP-seq from ENCODE/Broad Institute
     Broad ChromHMM     Chromatin State Segmentation by HMM from ENCODE/Broad
ENC RNA Binding ENCODE RNA Binding Proteins
     SUNY RIP-seq     RIP-seq from ENCODE/SUNY Albany
     SUNY RIP Tiling     RNA Binding Protein Associated RNA by Tiling Array from ENCODE/SUNY Albany
     SUNY RIP GeneST     RNA Binding Protein Associated RNA by RIP-chip GeneST from ENCODE/SUNY Albany
ENC TF Binding ENCODE Transcription Factor Binding
     Uniform TFBS     Transcription Factor ChIP-seq Uniform Peaks from ENCODE/Analysis
     ENCODE 3 TFBS     Transcription Factor ChIP-seq Peaks (338 factors in 130 cell types) from ENCODE 3
     UW CTCF Binding     CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
     UTA TFBS     Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)
     UChicago TFBS     Transcription Factor Binding Sites by Epitope-Tag from ENCODE/UChicago
     SYDH TFBS     Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard
     HAIB TFBS     Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
FANTOM5 FANTOM5: Mapped transcription start sites (TSS) and their usage
     TSS activity (TPM)     FANTOM5: TSS activity per sample (TPM)
     TSS activity - read counts     FANTOM5: TSS activity per sample read counts
     FANTOM CAT     FANTOM5: atlas of human long non-coding RNAs with accurate 5' ends
     Max counts of CAGE reads     FANTOM5: Max counts of CAGE reads
     Total counts of CAGE reads     FANTOM5: Total counts of CAGE reads
     TSS peaks     FANTOM5: DPI peak, robust set
     Enhancer - promoter correlations distances organ     FANTOM5: Enhancer - promoter correlations distances organ
     Enhancer - promoter correlations distances cell type     FANTOM5: Enhancer - promoter correlations distances cell type
     FANTOM-NET Enhancers     FANTOM5: FANTOM-NET Enhancers
     Enhancers     FANTOM5: Enhancers
FSU Repli-chip Replication Timing by Repli-chip from ENCODE/FSU
GeneHancer GeneHancer Regulatory Elements and Gene Interactions
Genome Segments Genome Segmentations from ENCODE
GTEx Combined eQTL Combined Expression QTLs from 44 Tissues from GTEx (midpoint release, V6)
GTEx Tissue eQTL Expression QTLs in 44 tissues from GTEx (midpoint release, V6)
JASPAR Transcription Factors JASPAR Transcription Factor Binding Site Database
NKI Nuc Lamina NKI Nuclear Lamina Associated Domains (LaminB1 DamID)
     NKI LADs (Tig3)     NKI LADs (Lamina Associated Domains, Tig3 cells)
     LaminB1 (Tig3)     NKI LaminB1 DamID Map (log2-ratio scores, Tig3 cells)
ORegAnno Regulatory elements from ORegAnno
Rao 2014 Hi-C Hi-C on 7 cell lines from Rao 2014
ReMap ChIP-seq ReMap Atlas of Regulatory Regions
Stanf Nucleosome Nucleosome Position by MNase-seq from ENCODE/Stanford/BYU
SUNY SwitchGear RNA Binding Protein Associated RNA by SwitchGear from ENCODE/SUNY Albany
SwitchGear TSS SwitchGear Genomics Transcription Start Sites
TFBS Conserved HMR Conserved Transcription Factor Binding Sites
TS miRNA Targets TargetScan predicted microRNA target sites
     TS miRNA v7.2     Predicted microRNA Target Sites from TargetScanHuman 7.2 (March 2018)
     TS miRNA sites     TargetScan miRNA Regulatory Sites (Release 5.1, April 2009)
UCSF Brain Methyl UCSF Brain DNA Methylation
UMMS Brain Hist Brain Histone H3K4me3 ChIP-Seq from Univ. Mass. Medical School (Akbarian/Weng)
UW Repli-seq Replication Timing by Repli-seq from ENCODE/University of Washington
VISTA Enhancers VISTA Enhancers
-   Comparative Genomics    
Conservation Vertebrate Multiz Alignment & Conservation (100 Species)
Cons 46-Way Vertebrate Multiz Alignment & Conservation (46 Species)
Cons Indels MmCf Indel-based Conservation for Human hg19, Mouse mm8 and Dog canFam2
Evo Cpg Weizmann Evolutionary CpG Islands
GERP GERP Scores for Mammalian Alignments
phastBias gBGC phastBias gBGC predictions
Primate Chain/Net Primate Genomes, Chain and Net Alignments
Placental Chain/Net Non-primate Placental Mammal Genomes, Chain and Net Alignments
Vertebrate Chain/Net Non-placental Vertebrate Genomes, Chain and Net Alignments
CHM13 alignments CHM13 (GCA_009914755.4) v1_nfLO liftOver alignments
+   Neandertal Assembly and Analysis    
+   Denisova Assembly and Analysis    
-   Variation    
dbSNP 155 Short Genetic Variants from dbSNP release 155
1000G Archive 1000 Genomes Archive
     1000G Ph3 Vars     1000 Genomes Phase 3 Integrated Variant Calls: SNVs, Indels, SVs
     1000G Ph3 Accsbl     1000 Genomes Project Phase 3 Paired-end Accessible Regions
     1000G Ph1 Vars     1000 Genomes Phase 1 Integrated Variant Calls: SNVs, Indels, SVs
     1000G Ph1 Accsbl     1000 Genomes Project Phase 1 Paired-end Accessible Regions
Array Probesets Microarray Probesets
dbSNP Archive dbSNP Track Archive
     Mult. SNPs(138)     Simple Nucleotide Polymorphisms (dbSNP 138) That Map to Multiple Genomic Loci
     Flagged SNPs(138)     Simple Nucleotide Polymorphisms (dbSNP 138) Flagged as Clinically Assoc
     Common SNPs(138)     Simple Nucleotide Polymorphisms (dbSNP 138) Found in >= 1% of Samples
     All SNPs(138)     Simple Nucleotide Polymorphisms (dbSNP 138)
     Flagged SNPs(141)     Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc
     Common SNPs(141)     Simple Nucleotide Polymorphisms (dbSNP 141) Found in >= 1% of Samples
     All SNPs(141)     Simple Nucleotide Polymorphisms (dbSNP 141)
     Mult. SNPs(142)     Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci
     Flagged SNPs(142)     Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc
     Common SNPs(142)     Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples
     All SNPs(142)     Simple Nucleotide Polymorphisms (dbSNP 142)
     Mult. SNPs(144)     Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci
     Flagged SNPs(144)     Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc
     Common SNPs(144)     Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples
     All SNPs(144)     Simple Nucleotide Polymorphisms (dbSNP 144)
     Mult. SNPs(146)     Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci
     Flagged SNPs(146)     Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc
     Common SNPs(146)     Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples
     All SNPs(146)     Simple Nucleotide Polymorphisms (dbSNP 146)
     Mult. SNPs(147)     Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci
     Flagged SNPs(147)     Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc
     Common SNPs(147)     Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples
     All SNPs(147)     Simple Nucleotide Polymorphisms (dbSNP 147)
     Mult. SNPs(150)     Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci
     Flagged SNPs(150)     Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc
     Common SNPs(150)     Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples
     All SNPs(150)     Simple Nucleotide Polymorphisms (dbSNP 150)
     Mult. SNPs(151)     Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci
     Flagged SNPs(151)     Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc
     All SNPs(151)     Simple Nucleotide Polymorphisms (dbSNP 151)
     Common SNPs(151)     Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples
     dbSNP 153     Short Genetic Variants from dbSNP release 153
dbVar Common Struct Var NCBI Curated Common Structural Variants from dbVar
     dbVar Conflict SV     NCBI dbVar Curated Conflict Variants
     dbVar Common SV     NCBI dbVar Curated Common Structural Variants
DGV Struct Var Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del)
EVS Variants NHLBI GO Exome Sequencing Project (ESP) - Variants from 6,503 Exomes
ExAC Exome Aggregation Consortium (ExAC) Variants and Calling Regions
Genome In a Bottle Genome In a Bottle Structural Variants and Trios
Genome Variants Personal Genome Variants
GIS DNA PET ENCODE Genome Institute of Singapore DNA Paired-End Ditags
gnomAD Genome Aggregation Database (gnomAD) - Variants, Coverage, and Constraint
     gnomAD Structural Variants     Genome Aggregation Database (gnomAD) - Structural Variants
     gnomAD pext     gnomAD Proportion Expression Across Transcript Scores (pext)
     gnomAD Genomes Variants     Genome Aggregation Database (gnomAD) Genome Variants v2.1.1
     gnomAD Exomes Variants     Genome Aggregation Database (gnomAD) Exome Variants v2.1.1
     gnomAD Coverage     Genome Aggregation Database (gnomAD) - Genome and Exome Sample Coverage
     gnomAD Constraint Metrics     Genome Aggregation Database (gnomAD) - Predicted Constraint Metrics (pLI and Z-scores)
HAIB Genotype Genotype (CNV and SNP) by Illumina 1MDuo and CBS from ENCODE/HudsonAlpha
HapMap SNPs HapMap SNPs (rel27, merged Phase II + Phase III genotypes)
HGDP Allele Freq Human Genome Diversity Project SNP Population Allele Frequencies
Platinum Genomes Platinum genome variants
-   Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
NumtS Sequence Human NumtS mitochondrial sequence
Segmental Dups Duplications of >1000 Bases of Non-RepeatMasked Sequence
Self Alignment Human Chained Self Alignments
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust