Manage Custom Tracks
 
Genome: Human    Assembly: Feb. 2009 (GRCh37/hg19)    [hg19]
Name Description Type Doc Items Pos
IOSE4_H3K27acIOSE4_H3K27acbed 88368chr1:  
EEC16_H3K27acEEC16_H3K27acbed 67849chr1:  
OAW42_H3K27AcOAW42_H3K27AcencodePeak      
MCAS_H3K27AcMCAS_H3K27AcencodePeak      
GTFR230_H3K27AcGTFR230_H3K27AcencodePeak      
UWB1.289_H3K27acUWB1.289_H3K27acbed 50621chr1:  
FTSEC246_H3K27acFTSEC246_H3K27acbed 60179chr1:  
FTSEC33_H3K27acFTSEC33_H3K27acbed 71231chr1:  
Enhancers in Colon_Crypt_2 in Colon_Crypt_2Enhancers in Colon_Crypt_2 in Colon_Crypt_2bed 17254chr17:  
Enhancers in Colon_Crypt_1 in Colon_Crypt_1Enhancers in Colon_Crypt_1 in Colon_Crypt_1bed 17497chr15:  
Enhancers in UCSD_Sigmoid_Colon in UCSD_Sigmoid_ColonEnhancers in UCSD_Sigmoid_Colon in UCSD_Sigmoid_Colonbed 15227chr17:  
Enhancers in UCSD_Ovary in UCSD_OvaryEnhancers in UCSD_Ovary in UCSD_Ovarybed 11781chr2:  
IOSE11_H3K27acIOSE11_H3K27acbed 100192chr1:  
CaOV3_H3K27acCaOV3_H3K27acbed 34400chr1:  
Ovary Histone ChIP-seq peak densityOvary Histone ChIP-seq peak densitybedGraph 6422458chr1:
OCAC candidate causal variantsOCAC candidate causal variantsbed 571chr2:
IM-PET enhancers overlapping SNPIM-PET enhancers overlapping SNPbed 44chr8:
Hnisz enhancers overlapping SNPHnisz enhancers overlapping SNPbed 15chr2:
PreSTIGE enhancers overlapping SNPPreSTIGE enhancers overlapping SNPbed 3chr8:
TF-chip peaks overlapping candidate SNPTF-chip peaks overlapping candidate SNPbed 307chr10:
Ovary DNase/FAIRE-seq peak densityOvary DNase/FAIRE-seq peak densitybedGraph 1871107chr1:
Ovary TF ChIP-seq peak densityOvary TF ChIP-seq peak densitybedGraph 6719798chr1:
Ovary_ChromHMM-25state_PROMOTERSOvary_ChromHMM-25state_PROMOTERSbed 80955chr10:  
Ovary_ChromHMM-25state_ENHANCERSOvary_ChromHMM-25state_ENHANCERSbed 212341chr10:  
Ovary_ChromHMM-25state_TRANSCRIBEDOvary_ChromHMM-25state_TRANSCRIBEDbed 214370chr10:  
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Managing Custom Tracks
 

This section provides a brief description of the columns in custom track management table. For more details about managing custom tracks, see the Genome Browser User's Guide.

  • Name - a hyperlink to the update page where you can edit your track data.
  • Description - the value of the "description" attribute from the track line, if present. If no description is included in the input file, this field contains the track name.
  • Type - the track type, determined by the Browser based on the format of the data.
  • Doc - displays "Y" (Yes) if a description page has been uploaded for the track; otherwise the field is blank.
  • Items - the number of data items in the custom track file. An item count is not displayed for tracks lacking individual items (e.g. wiggle format data).
  • Pos - the default chromosomal position defined by the track file in either the browser line "position" attribute or the first data line. Clicking this link opens the Genome Browser or Table Browser at the specified position (note: only the chromosome name is shown in this column). The Pos column remains blank if the track lacks individual items (e.g. wiggle format data) and the browser line "position" attribute hasn't been set.