Manage Custom Tracks
 
Genome: Mouse    Assembly: Dec. 2011 (GRCm38/mm10)    [mm10]
Name Description Type Doc Items Pos Error
migrationUNIQUE_CTCFmigrationUNIQUE_CTCFbedY8228chr1: 
controlUNIQUE_CTCFcontrolUNIQUE_CTCFbedY1807chr1: 
migrationCOMMON_CTCFmigrationCOMMON_CTCFbedY20683chr1: 
controlCOMMON_CTCFcontrolCOMMON_CTCFbedY21023chr1: 
CTCF migration peaksCFCT migration peaksencodePeak      
CTCF control peaksCFCT control peaksencodePeak      
CTCF control unique peaksCTCF control unique peaksbed 6chr11: 
CTCF migration unique peaksCTCF migration unique peaksbed 183chr1: 
CTCF common peaksCTCF common peaksbed 27627chr1: 
CTCF_control_InoutCTCF_control_InputbigWig     Show
CTCF_control_IPCTCF_control_IPbigWig     Show
CTCF_migration_InputCTCF_migration_InputbigWig     Show
CTCF_migration_IPCTCF_migration_IPbigWig     Show
CR_SicerCR_Sicerbed 33550chr1: 
CRCR narrowPeakencodePeak      
M20_increased_SicerM20_increased_Sicerbed 142chr1: 
M20_decreased_SicerM20_decreased_Sicerbed 18935chr1: 
M20_IPM20_IPbigWig     Show
C20_600_IP_broadC20_600_IP_broadencodePeak      
CR_InputCR_InputbigWig     Show
MR_InputMR_InputbigWig     Show
MR_IPMR_IPbigWig     Show
MRG_IPMRG_IPbigWig     Show
CR_IPCR_IPbigWig     Show
CRG_IPCRG_IPbigWig     Show
C20_IP_broadC20_IP_broadencodePeak      
C20 narrowPeakC20 narrowPeakencodePeak      
C20_IPC20_IPbigWig     Show
C9_M9deepTools C9_M9bigWig     Show
C27_M27deepTools C27_M27bigWig     Show
Sicer_M9_peaksSicer_M9_peaksbed 14290chr1: 
C27_IPC27_IPbigWig     Show
M27_IPM27_IPbigWig     Show
MAC_IPMAC_IPbigWig     Show
CAC_IPCAC_IPbigWig     Show
M9_IPM9_IPbigWig     Show
M_inputM_inputbigWig     Show
C_inputC_inputbigWig     Show
C9_peaksC9_peaksbed 227chr1: 
C9_IPC9_IPbigWig     Show
check all / clear all 

Managing Custom Tracks
 

This section provides a brief description of the columns in custom track management table. For more details about managing custom tracks, see the Genome Browser User's Guide.

  • Name - a hyperlink to the update page where you can edit your track data.
  • Description - the value of the "description" attribute from the track line, if present. If no description is included in the input file, this field contains the track name.
  • Type - the track type, determined by the Browser based on the format of the data.
  • Doc - displays "Y" (Yes) if a description page has been uploaded for the track; otherwise the field is blank.
  • Items - the number of data items in the custom track file. An item count is not displayed for tracks lacking individual items (e.g. wiggle format data).
  • Pos - the default chromosomal position defined by the track file in either the browser line "position" attribute or the first data line. Clicking this link opens the Genome Browser or Table Browser at the specified position (note: only the chromosome name is shown in this column). The Pos column remains blank if the track lacks individual items (e.g. wiggle format data) and the browser line "position" attribute hasn't been set.