UTA TFBS Downloadable Files
  Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)   (Track settings)
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Cell Line:
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Until:
 
 602 files Cell Line Treatment Antibody
Target		 Replicate Control ID View UCSC Accession GEO Accession Size File Type Submitted RESTRICTED
Until		 Additional Details
A549NoneCTCF (07-729)  wgEncodeEH002077SignalwgEncodeEH002078GSM8222893.3 GBbigWig2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4935; setType=exp; labVersion=fseq v 1.84, iff_A549; tableName=wgEncodeOpenChromChipA549CtcfSig; md5sum=afabd35729567419d985268315dc56ee;
A549NoneCTCF (07-729)1wgEncodeEH002077PeakswgEncodeEH002078GSM8222891.0 MBnarrowPeak2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4935; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipA549CtcfPkRep1; md5sum=d569f0c82f20b4f8dc5d0dd7534be445;
A549NoneCTCF (07-729)1wgEncodeEH002077Raw datawgEncodeEH002078GSM8222891.2 GBfastq2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4935; setType=exp; md5sum=d84f963c22e1377c29a00fbd8637f599;
A549NoneCTCF (07-729)2wgEncodeEH002077Raw datawgEncodeEH002078GSM8222891.3 GBfastq2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4935; setType=exp; md5sum=b1a64febac13a7b47420e15f6a95fef5;
A549NoneCTCF (07-729)  wgEncodeEH002077Base overlap signalwgEncodeEH002078GSM8222891.2 GBbigWig2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4935; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipA549CtcfBaseOverlapSignal; md5sum=f89f08bdb4fcda3afad134d9f2c137a8;
A549NoneCTCF (07-729)1wgEncodeEH002077AlignmentswgEncodeEH002078GSM8222896.0 MBbam.bai2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4935; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=6d3516f07cdabd9f850c74a05395101b;
A549NoneCTCF (07-729)1wgEncodeEH002077AlignmentswgEncodeEH002078GSM8222891.3 GBbam2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4935; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=5324e783162610f17d4d7a69d81aa8c0;
A549NoneCTCF (07-729)2wgEncodeEH002077AlignmentswgEncodeEH002078GSM8222896.0 MBbam.bai2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4935; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=ace82b3d5287a9e90fc79a5c19b9df67;
A549NoneCTCF (07-729)2wgEncodeEH002077AlignmentswgEncodeEH002078GSM8222891.3 GBbam2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4935; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=12ef6805ba5b51fa052c88b48396c6a0;
A549NoneInput  wgEncodeEH002077SignalwgEncodeEH002077GSM8223074.2 GBbigWig2011-09-272012-06-27dataVersion=ENCODE Mar 2012 Freeze; subId=4906; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipA549InputSig; md5sum=36954296ee8439c0121139ad5be57f7c;
A549NoneInput  wgEncodeEH002077Raw datawgEncodeEH002077GSM8223071.3 GBfastq2011-09-272012-06-27dataVersion=ENCODE Mar 2012 Freeze; subId=4906; setType=input; md5sum=3738dc8b22cc0d554f73eee05d7c7cf6;
A549NoneInput  wgEncodeEH002077AlignmentswgEncodeEH002077GSM8223076.2 MBbam.bai2011-09-272012-06-27dataVersion=ENCODE Mar 2012 Freeze; subId=4906; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=8c8481ce35c9d1fff458e52abe44bffc;
A549NoneInput  wgEncodeEH002077AlignmentswgEncodeEH002077GSM8223071.4 GBbam2011-09-272012-06-27dataVersion=ENCODE Mar 2012 Freeze; subId=4906; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=0f17442a40250b0f831fffdd9dcf59d9;
A549NonePOL2 (MMS-126R)  wgEncodeEH002077SignalwgEncodeEH002079GSM8222882.7 GBbigWig2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4934; setType=exp; labVersion=fseq v 1.84, iff_A549; tableName=wgEncodeOpenChromChipA549Pol2Sig; md5sum=4655edee6a696106fe056124c1899e05;
A549NonePOL2 (MMS-126R)1wgEncodeEH002077AlignmentswgEncodeEH002079GSM8222886.1 MBbam.bai2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4934; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=0abcbc45e238cf8760f95947b436a605;
A549NonePOL2 (MMS-126R)1wgEncodeEH002077AlignmentswgEncodeEH002079GSM8222881.2 GBbam2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4934; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=b9b9a57bea8c1a5e1ab05b3411c7d23e;
A549NonePOL2 (MMS-126R)1wgEncodeEH002077PeakswgEncodeEH002079GSM8222881.1 MBnarrowPeak2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4934; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipA549Pol2PkRep1; md5sum=edf11360e951aea8bcb51a66682293a3;
A549NonePOL2 (MMS-126R)1wgEncodeEH002077Raw datawgEncodeEH002079GSM8222881.2 GBfastq2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4934; setType=exp; md5sum=df96e7f012a0d38b9e26508e9c9a3bd9;
A549NonePOL2 (MMS-126R)2wgEncodeEH002077Raw datawgEncodeEH002079GSM8222881.0 GBfastq2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4934; setType=exp; md5sum=2e059073c17a18017f1d60df3a780e29;
A549NonePOL2 (MMS-126R)  wgEncodeEH002077Base overlap signalwgEncodeEH002079GSM8222881.3 GBbigWig2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4934; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipA549Pol2BaseOverlapSignal; md5sum=15cc6cfc57117ebc2caab65230ce4433;
A549NonePOL2 (MMS-126R)2wgEncodeEH002077AlignmentswgEncodeEH002079GSM8222886.0 MBbam.bai2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4934; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=fa1dfa953787ba15c5ec70318fecc67d;
A549NonePOL2 (MMS-126R)2wgEncodeEH002077AlignmentswgEncodeEH002079GSM8222881.0 GBbam2011-09-292012-06-29dataVersion=ENCODE Mar 2012 Freeze; subId=4934; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=ca0b631be1d04e6cdde0f2e4e1920199;
Colon OC  Input  wgEncodeEH003445SignalwgEncodeEH003445GSM10068883.5 GBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7524; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipColonocInputSig; md5sum=3181d55ec6bc75f82de0f65cd4d837b0;
Colon OC  Input  wgEncodeEH003445Raw datawgEncodeEH003445GSM1006888550 MBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7524; setType=input; md5sum=29cd64afd0c7cfc8cdbba25b95aa5270;
Colon OC  Input  wgEncodeEH003445AlignmentswgEncodeEH003445  5.7 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7524; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=f43d587f7464aa0541efab83932b7721;
Colon OC  Input  wgEncodeEH003445AlignmentswgEncodeEH003445  416 MBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7524; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=15bac287a548d4d166d511db6a82090c;
FibroblNoneCTCF (07-729)  wgEncodeEH001128SignalwgEncodeEH001127GSM8222814.1 GBbigWig2010-10-132011-07-13origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2480; setType=exp; labVersion=privacy-noSequence fseq v 1.84, iff_FB8470; tableName=wgEncodeOpenChromChipFibroblCtcfSig; md5sum=fe21c95a32bb0a41d7476f008b46ce6b;
FibroblNoneCTCF (07-729)  wgEncodeEH001128PeakswgEncodeEH001127GSM8222811.2 MBnarrowPeak2010-10-132011-07-13origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2480; setType=exp; labVersion=privacy-noSequence p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipFibroblCtcfPkRep1; md5sum=a96e9f71210ee3c26b25b88cbd17ea77;
FibroblNoneCTCF (07-729)  wgEncodeEH001128Base overlap signalwgEncodeEH001127GSM822281172 MBbigWig2010-10-132011-07-13origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2480; setType=exp; labVersion=privacy-noSequence baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipFibroblCtcfBaseOverlapSignal; md5sum=dab29e01f678fd54430857815061de7a;
FibroblNoneCTCF (07-729)1wgEncodeEH001128AlignmentswgEncodeEH001127GSM8222815.6 MBbam.bai2010-10-132011-07-13origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2480; setType=exp; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=b3f5ee7e5dfc381e376866ba813df104;
FibroblNoneCTCF (07-729)1wgEncodeEH001128AlignmentswgEncodeEH001127GSM822281377 MBbam2010-10-132011-07-13origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2480; setType=exp; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=73ceacd96d6340593f7063d02d490eb5;
FibroblNoneCTCF (07-729)2wgEncodeEH001128AlignmentswgEncodeEH001127GSM8222815.7 MBbam.bai2010-10-132011-07-13origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2480; setType=exp; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=40ba37d1a81006d74d7e0d3efa99a739;
FibroblNoneCTCF (07-729)2wgEncodeEH001128AlignmentswgEncodeEH001127GSM822281382 MBbam2010-10-132011-07-13origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2480; setType=exp; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=4dd6716a0af3d9dd760e665f6c21a90f;
FibroblNoneInput  wgEncodeEH001128SignalwgEncodeEH001128GSM8222674.3 GBbigWig2010-10-142011-07-14origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2487; setType=input; labVersion=privacy-noSequence fseq v 1.84; tableName=wgEncodeOpenChromChipFibroblInputSig; md5sum=eb732363b7174de8db9770eebcdff881;
FibroblNoneInput  wgEncodeEH001128AlignmentswgEncodeEH001128GSM8222676.1 MBbam.bai2010-10-142011-07-14origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2487; setType=input; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=6478ca3133d4f9dbebca385e1bcfa0c9;
FibroblNoneInput  wgEncodeEH001128AlignmentswgEncodeEH001128GSM822267745 MBbam2010-10-142011-07-14origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2487; setType=input; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=0508b60fa6b9d866c13d0ed55812d4e6;
GM10248  Input  wgEncodeEH003442SignalwgEncodeEH003442GSM10068953.1 GBbigWig2012-07-252013-04-25dataVersion=ENCODE Jul 2012 Freeze; subId=7517; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipGm10248InputSig; md5sum=212ecb150e275aae6aad859ae8d20881;
GM10248  Input  wgEncodeEH003442Raw datawgEncodeEH003442GSM1006895426 MBfastq2012-07-252013-04-25dataVersion=ENCODE Jul 2012 Freeze; subId=7517; setType=input; md5sum=9598a3d4b33281779ad560259fd1682a;
GM10248  Input  wgEncodeEH003442AlignmentswgEncodeEH003442  5.7 MBbam.bai2012-07-252013-04-25dataVersion=ENCODE Jul 2012 Freeze; subId=7517; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=b44e11e152573c3f3f35d947ef71bd9a;
GM10248  Input  wgEncodeEH003442AlignmentswgEncodeEH003442  352 MBbam2012-07-252013-04-25dataVersion=ENCODE Jul 2012 Freeze; subId=7517; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=0b4fb0bc2ae331e5bf3ee3cfcb534da4;
GM10248  CTCF (07-729)1wgEncodeEH003442SignalwgEncodeEH003446GSM10068914.1 GBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7690; setType=exp; labVersion=fseq v 1.84, iff_GM10248; tableName=wgEncodeOpenChromChipGm10248CtcfSigRep1; md5sum=839dd902de3857ad37d8ea3fed4fc698;
GM10248  CTCF (07-729)2wgEncodeEH003442Raw datawgEncodeEH003446GSM1006891557 MBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7690; setType=exp; md5sum=402583baf1ba989b1c92fc5b522e72a5;
GM10248  CTCF (07-729)1wgEncodeEH003442Raw datawgEncodeEH003446GSM10068911.8 GBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7690; setType=exp; md5sum=5776535cfda454ba0b890622d10018e7;
GM10248  CTCF (07-729)1wgEncodeEH003442PeakswgEncodeEH003446GSM10068911.3 MBnarrowPeak2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7690; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGm10248CtcfPkRep1; md5sum=285966ae09ce968994fae18e23a07669;
GM10248  CTCF (07-729)1wgEncodeEH003442Base overlap signalwgEncodeEH003446GSM10068911.1 GBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7690; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm10248CtcfBaseOverlapSignalRep1; md5sum=8c78183239dc6ed65bd794cc374814f4;
GM10248  CTCF (07-729)2wgEncodeEH003442AlignmentswgEncodeEH003446  5.8 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7690; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=ccedcdc8e5b7b96dad8af4e592b26d41;
GM10248  CTCF (07-729)2wgEncodeEH003442AlignmentswgEncodeEH003446  527 MBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7690; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=296a37a4726d5945b9e356d91615f0ee;
GM10248  CTCF (07-729)1wgEncodeEH003442AlignmentswgEncodeEH003446  6.0 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7690; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=d76887f7a384c55d059e2a5bede885f9;
GM10248  CTCF (07-729)1wgEncodeEH003442AlignmentswgEncodeEH003446  932 MBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7690; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=e2638dbe756ffb85635af279bd27882d;
GM10266  Input  wgEncodeEH003447SignalwgEncodeEH003447GSM10068903.9 GBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7518; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipGm10266InputSig; md5sum=f651996bd2196690a97762237eb9bfc2;
GM10266  Input  wgEncodeEH003447Raw datawgEncodeEH003447GSM1006890838 MBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7518; setType=input; md5sum=4f932096f99cc18ee15da45425e03ed9;
GM10266  Input  wgEncodeEH003447AlignmentswgEncodeEH003447  5.9 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7518; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=f5de474c50a1eb5b61f4f283f6fb2403;
GM10266  Input  wgEncodeEH003447AlignmentswgEncodeEH003447  674 MBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7518; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=ff90e25c27c49e22117f127b0755f645;
GM10266  CTCF (07-729)1wgEncodeEH003447SignalwgEncodeEH003457GSM10068704.2 GBbigWig2012-07-302013-04-29dataVersion=ENCODE Jul 2012 Freeze; subId=7534; setType=exp; labVersion=fseq v 1.84, iff_GM10266; tableName=wgEncodeOpenChromChipGm10266CtcfSigRep1; md5sum=364e2aa5648d2ec0077d6db39cc79921;
GM10266  CTCF (07-729)2wgEncodeEH003447Raw datawgEncodeEH003457GSM1006870789 MBfastq2012-07-302013-04-29dataVersion=ENCODE Jul 2012 Freeze; subId=7534; setType=exp; md5sum=7e342137b047d7e933d5c3e1293433cc;
GM10266  CTCF (07-729)1wgEncodeEH003447Raw datawgEncodeEH003457GSM10068701.4 GBfastq2012-07-302013-04-29dataVersion=ENCODE Jul 2012 Freeze; subId=7534; setType=exp; md5sum=2e950e7b7368f8a1ad653389d557335a;
GM10266  CTCF (07-729)1wgEncodeEH003447PeakswgEncodeEH003457GSM10068701.3 MBnarrowPeak2012-07-302013-04-29dataVersion=ENCODE Jul 2012 Freeze; subId=7534; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGm10266CtcfPkRep1; md5sum=a3a7daa60e6440de140376f4e7603835;
GM10266  CTCF (07-729)1wgEncodeEH003447Base overlap signalwgEncodeEH003457GSM10068701.2 GBbigWig2012-07-302013-04-29dataVersion=ENCODE Jul 2012 Freeze; subId=7534; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm10266CtcfBaseOverlapSignalRep1; md5sum=e2506799701495ce772d4908633548af;
GM10266  CTCF (07-729)2wgEncodeEH003447AlignmentswgEncodeEH003457  5.9 MBbam.bai2012-07-302013-04-29dataVersion=ENCODE Jul 2012 Freeze; subId=7534; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=21d29dd0d6a7c50b9564a45298748bb1;
GM10266  CTCF (07-729)2wgEncodeEH003447AlignmentswgEncodeEH003457  765 MBbam2012-07-302013-04-29dataVersion=ENCODE Jul 2012 Freeze; subId=7534; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=15a25d31d3828d65104b57e138d1b54f;
GM10266  CTCF (07-729)1wgEncodeEH003447AlignmentswgEncodeEH003457  6.2 MBbam.bai2012-07-302013-04-29dataVersion=ENCODE Jul 2012 Freeze; subId=7534; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=198ef5c02e4d66ae8b79b245d7eb1446;
GM10266  CTCF (07-729)1wgEncodeEH003447AlignmentswgEncodeEH003457  1.3 GBbam2012-07-302013-04-29dataVersion=ENCODE Jul 2012 Freeze; subId=7534; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=71a497bc1a22eac42bbbd1ff27247a7c;
GM12878NoneCTCF (07-729)  wgEncodeEH000528ValidationwgEncodeEH000532GSM822312 48 MBtgz2011-03-212011-03-21dataVersion=ENCODE Mar 2012 Freeze; subId=3832; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=6ce33a140c328e68d52bd1124d610624;
GM12878NoneCTCF (07-729)  wgEncodeEH000528SignalwgEncodeEH000532GSM8223123.7 GBbigWig2010-10-012011-07-01origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=2449; setType=exp; labVersion=fseq v 1.84, iff_GM12878; tableName=wgEncodeOpenChromChipGm12878CtcfSig; md5sum=9f97e9172995f5241263237eb5e91b20;
GM12878NoneCTCF (07-729)1wgEncodeEH000528AlignmentswgEncodeEH000532GSM8223125.6 MBbam.bai2010-10-012011-07-01origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=2449; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=335f8c4328e6115b9a169a41cc7d71b1;
GM12878NoneCTCF (07-729)1wgEncodeEH000528AlignmentswgEncodeEH000532GSM822312352 MBbam2010-10-012011-07-01origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=2449; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=49a0bd6730c3950087edd7162a7a286d;
GM12878NoneCTCF (07-729)1wgEncodeEH000528Raw datawgEncodeEH000532GSM822312342 MBfastq2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-04; subId=468; setType=exp; md5sum=49d078a7cc72e52fdca9c9806c9d375f;
GM12878NoneCTCF (07-729)2wgEncodeEH000528AlignmentswgEncodeEH000532GSM8223125.6 MBbam.bai2010-10-012011-07-01origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=2449; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=0d3119b01481ddbc44e2195460e68bf0;
GM12878NoneCTCF (07-729)2wgEncodeEH000528AlignmentswgEncodeEH000532GSM822312299 MBbam2010-10-012011-07-01origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=2449; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=24c25b458cd7e472af7cff89b91ce706;
GM12878NoneCTCF (07-729)2wgEncodeEH000528Raw datawgEncodeEH000532  863 MBfastq2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-04; subId=468; setType=exp; md5sum=8857dc283de4486075d9220966431943;
GM12878NoneCTCF (07-729)3wgEncodeEH000528AlignmentswgEncodeEH000532GSM8223125.7 MBbam.bai2010-10-012011-07-01origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=2449; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=f9115cdb4214f9cffc6fa0d5272823fb;
GM12878NoneCTCF (07-729)3wgEncodeEH000528AlignmentswgEncodeEH000532GSM822312512 MBbam2010-10-012011-07-01origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=2449; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=c7afb31b2e0b6a6c11c3f7f6793ff9cc;
GM12878NoneCTCF (07-729)3wgEncodeEH000528Raw datawgEncodeEH000532GSM822312489 MBfastq2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-04; subId=468; setType=exp; md5sum=60159eff02f764d871ed8c38882debb7;
GM12878NoneCTCF (07-729)  wgEncodeEH000528PeakswgEncodeEH000532GSM8223121.3 MBnarrowPeak2010-10-012011-07-01origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=2449; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGm12878CtcfPkRep1; md5sum=a6f856eb3742b57cd1515cf4669b620d;
GM12878NoneCTCF (07-729)  wgEncodeEH000528Base overlap signalwgEncodeEH000532GSM822312171 MBbigWig2010-10-012011-07-01origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; subId=2449; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm12878CtcfBaseOverlapSignal; md5sum=a2fc6645e422a6e460c66140efa93422;
GM12878NoneInput  wgEncodeEH000528SignalwgEncodeEH000528GSM8222924.3 GBbigWig2008-11-072009-07-07origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1518; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipGm12878InputSig; md5sum=c8ac97d5267c4a404cc519c3057e5751;
GM12878NoneInput  wgEncodeEH000528Raw datawgEncodeEH000528GSM822292537 MBfastq2008-11-072009-07-07origAssembly=hg18; dataVersion=ENCODE Nov 2008 Freeze; subId=34; setType=input; md5sum=b7b552c10494212ce4f100d1b4bf75d5;
GM12878NoneInput  wgEncodeEH000528AlignmentswgEncodeEH000528GSM8222925.8 MBbam.bai2008-11-072009-07-07origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1518; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=2db851f92ca557f0e0bb8ca52bb97c8a;
GM12878NoneInput  wgEncodeEH000528AlignmentswgEncodeEH000528GSM822292593 MBbam2008-11-072009-07-07origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1518; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=fc01a486efc03b42f259299c64210069;
GM12878NonePOL2 (MMS-126R)  wgEncodeEH000528ValidationwgEncodeEH000592GSM822270 48 MBtgz2011-03-212011-03-21dataVersion=ENCODE Mar 2012 Freeze; subId=3832; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=2be0fbf348e706ba4862cc72c5df2a13;
GM12878NonePOL2 (MMS-126R)  wgEncodeEH000528SignalwgEncodeEH000592GSM8222702.0 GBbigWig2009-12-232010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-15; subId=1478; setType=exp; labVersion=fseq v 1.84, iff_GM12878; tableName=wgEncodeOpenChromChipGm12878Pol2Sig; md5sum=216df87085ad3667fe9963c01f4a0756;
GM12878NonePOL2 (MMS-126R)1wgEncodeEH000528AlignmentswgEncodeEH000592GSM8222705.7 MBbam.bai2009-12-232010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-15; subId=1478; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=6f56f0b134aec743d37fc2dab92dd0ab;
GM12878NonePOL2 (MMS-126R)1wgEncodeEH000528AlignmentswgEncodeEH000592GSM822270624 MBbam2009-12-232010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-15; subId=1478; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=5aca492cee5a348430c7d65f0bec5adc;
GM12878NonePOL2 (MMS-126R)1wgEncodeEH000528Raw datawgEncodeEH000592GSM822270732 MBfastq2009-12-232010-09-22origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; subId=868; setType=exp; md5sum=284e70e9916c0b35a8340784d8e08238;
GM12878NonePOL2 (MMS-126R)2wgEncodeEH000528AlignmentswgEncodeEH000592GSM822270687 MBbam2009-12-232010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-15; subId=1478; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=ee515d05481406ce25952295920c986d;
GM12878NonePOL2 (MMS-126R)2wgEncodeEH000528Raw datawgEncodeEH000592GSM822270638 MBfastq2009-12-232010-09-22origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; subId=868; setType=exp; md5sum=7dc1d7dbf009327e1344261758218e3e;
GM12878NonePOL2 (MMS-126R)  wgEncodeEH000528PeakswgEncodeEH000592GSM8222702.0 MBnarrowPeak2009-12-232010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-15; subId=1478; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGm12878Pol2Pk; md5sum=15373f463f3d6821047e8a4167a978c1;
GM12878NonePOL2 (MMS-126R)  wgEncodeEH000528Base overlap signalwgEncodeEH000592GSM822270178 MBbigWig2009-12-232010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-15; subId=1478; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm12878Pol2BaseOverlapSignal; md5sum=759f21263591ed1916db81b7d426ddde;
GM12878NonePOL2 (MMS-126R)2wgEncodeEH000528AlignmentswgEncodeEH000592GSM8222705.8 MBbam.bai2009-12-232010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-15; subId=1478; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=23b1339750042a5d0b1285c9691fc079;
GM12878Nonec-Myc (sc-764)  wgEncodeEH000528ValidationwgEncodeEH000547GSM822290 48 MBtgz2011-03-212011-03-21dataVersion=ENCODE Mar 2012 Freeze; subId=3832; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=764998ed632d7689fa67ef10536ce880;
GM12878Nonec-Myc (sc-764)  wgEncodeEH000528SignalwgEncodeEH000547GSM8222903.1 GBbigWig2009-09-082010-06-08origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-02; subId=1229; setType=exp; labVersion=fseq v 1.84, iff_GM12878; tableName=wgEncodeOpenChromChipGm12878CmycSig; md5sum=4aaf1ff788c2e45d2c7a067e8f9a3c6b;
GM12878Nonec-Myc (sc-764)1wgEncodeEH000528Raw datawgEncodeEH000547GSM822290458 MBfastq2009-09-082010-06-08origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=472; setType=exp; md5sum=c1de271c9500a813ceb21d13419894f2;
GM12878Nonec-Myc (sc-764)1wgEncodeEH001129AlignmentswgEncodeEH000547GSM8222905.7 MBbam.bai2009-09-082010-06-08origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-02; subId=1229; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=934999b6cc645852fd6b7fb471feed01;
GM12878Nonec-Myc (sc-764)1wgEncodeEH001129AlignmentswgEncodeEH000547GSM822290444 MBbam2009-09-082010-06-08origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-02; subId=1229; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=8ce078f811af718f44a34c2146a3858f;
GM12878Nonec-Myc (sc-764)2wgEncodeEH000528Raw datawgEncodeEH000547GSM822290636 MBfastq2009-09-082010-06-08origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=472; setType=exp; md5sum=833ff9e94d7e1f32da61fe3670ac117e;
GM12878Nonec-Myc (sc-764)  wgEncodeEH000528PeakswgEncodeEH000547GSM822290373 KBnarrowPeak2009-09-082010-06-08origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-02; subId=1229; setType=exp; labVersion=p-value cutoff: 0.001; tableName=wgEncodeOpenChromChipGm12878CmycPk; md5sum=06cbc50b630d710ae406dfce63ec642e;
GM12878Nonec-Myc (sc-764)  wgEncodeEH000528Base overlap signalwgEncodeEH000547GSM822290137 MBbigWig2009-09-082010-06-08origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-02; subId=1229; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm12878CmycBaseOverlapSignal; md5sum=c541180cfc5e956ad595e8ed9ce3d777;
GM12878Nonec-Myc (sc-764)2wgEncodeEH000528AlignmentswgEncodeEH000547GSM8222905.6 MBbam.bai2009-09-082010-06-08origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-02; subId=1229; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=3867e8c1833442c9578ea7e2e0f13960;
GM12878Nonec-Myc (sc-764)2wgEncodeEH000528AlignmentswgEncodeEH000547GSM822290499 MBbam2009-09-082010-06-08origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-02; subId=1229; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=7b15fc2ea3fddb719626d68569432a22;
GM12891NoneCTCF (07-729)  generic_maleSignalwgEncodeEH000569GSM8222942.9 GBbigWig2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1490; setType=exp; labVersion=fseq v 1.84, iff_generic_male; tableName=wgEncodeOpenChromChipGm12891CtcfSig; md5sum=950bc7bd1cb829eca1b368ea3d9c095c;
GM12891NoneCTCF (07-729)1generic_maleAlignmentswgEncodeEH000569GSM8222945.6 MBbam.bai2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1490; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=196f5b859ffb0ee0a8dd2dfa5b62fd09;
GM12891NoneCTCF (07-729)1generic_maleAlignmentswgEncodeEH000569GSM822294491 MBbam2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1490; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=46fb8c464840ead4f7e4556aa64ca27b;
GM12891NoneCTCF (07-729)1generic_maleRaw datawgEncodeEH000569GSM822294514 MBfastq2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=644; setType=exp; md5sum=750523aba52772a9dadc23039e4c1c5c;
GM12891NoneCTCF (07-729)2generic_maleAlignmentswgEncodeEH000569GSM822294587 MBbam2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1490; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=fecb5a179c90c42b70d74a980bf20075;
GM12891NoneCTCF (07-729)2generic_maleRaw datawgEncodeEH000569GSM822294604 MBfastq2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=644; setType=exp; md5sum=d8c16ab6d6a9ea6b5341612cad9ced07;
GM12891NoneCTCF (07-729)  generic_malePeakswgEncodeEH000569GSM8222941.2 MBnarrowPeak2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1490; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGm12891CtcfPk; md5sum=9c8ce6b60bbee76bcc1d88097bdf6705;
GM12891NoneCTCF (07-729)  generic_maleBase overlap signalwgEncodeEH000569GSM822294136 MBbigWig2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1490; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm12891CtcfBaseOverlapSignal; md5sum=9ffdfb5b6d776952ef20220eaf71184c;
GM12891NoneCTCF (07-729)2generic_maleAlignmentswgEncodeEH000569GSM8222945.7 MBbam.bai2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1490; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=acfa4f6f409d22c7dfcde436e89a30cb;
GM12892NoneCTCF (07-729)  generic_femaleSignalwgEncodeEH000562GSM8222994.2 GBbigWig2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1491; setType=exp; labVersion=fseq v 1.84, iff_generic_female; tableName=wgEncodeOpenChromChipGm12892CtcfSig; md5sum=f1e7baf374a5d7b23c155da7dd58e044;
GM12892NoneCTCF (07-729)1generic_femaleAlignmentswgEncodeEH000562GSM8222995.8 MBbam.bai2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1491; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=16639a67b9768894a9ae49f3e3babce2;
GM12892NoneCTCF (07-729)1generic_femaleAlignmentswgEncodeEH000562GSM822299977 MBbam2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1491; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=63bc5d9187713ebe105eef4228d8483d;
GM12892NoneCTCF (07-729)1generic_femaleRaw datawgEncodeEH000562GSM822299980 MBfastq2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=638; setType=exp; md5sum=6c7c24ce8e70f7bbf35a8da1b156fa91;
GM12892NoneCTCF (07-729)2generic_femaleAlignmentswgEncodeEH000562GSM822299594 MBbam2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1491; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=7f1cf674026051df7efe2c06e764db3e;
GM12892NoneCTCF (07-729)2generic_femaleRaw datawgEncodeEH000562GSM822299603 MBfastq2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=638; setType=exp; md5sum=5c8dfa6ed9836d3ffc05cf658ff2a8c0;
GM12892NoneCTCF (07-729)  generic_femalePeakswgEncodeEH000562GSM8222991.2 MBnarrowPeak2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1491; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGm12892CtcfPk; md5sum=62afc2eada9b495bce82f8793934e08b;
GM12892NoneCTCF (07-729)  generic_femaleBase overlap signalwgEncodeEH000562GSM822299248 MBbigWig2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1491; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm12892CtcfBaseOverlapSignal; md5sum=02de06dc507b2524dea24ef623934462;
GM12892NoneCTCF (07-729)2generic_femaleAlignmentswgEncodeEH000562GSM8222995.6 MBbam.bai2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1491; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=5367ac8c1f2e37eb43a59ffc3a862b1a;
GM13976  Input  wgEncodeEH003443SignalwgEncodeEH003443GSM10068942.9 GBbigWig2012-07-252013-04-25dataVersion=ENCODE Jul 2012 Freeze; subId=7519; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipGm13976InputSig; md5sum=4033c9f429f77a88ebfd41df8dc74ae6;
GM13976  Input  wgEncodeEH003443Raw datawgEncodeEH003443GSM1006894382 MBfastq2012-07-252013-04-25dataVersion=ENCODE Jul 2012 Freeze; subId=7519; setType=input; md5sum=9915892b10701880d6f0defdac47e17d;
GM13976  Input  wgEncodeEH003443AlignmentswgEncodeEH003443  5.6 MBbam.bai2012-07-252013-04-25dataVersion=ENCODE Jul 2012 Freeze; subId=7519; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=15a48319db722e611e596f68a1fbd32b;
GM13976  Input  wgEncodeEH003443AlignmentswgEncodeEH003443  279 MBbam2012-07-252013-04-25dataVersion=ENCODE Jul 2012 Freeze; subId=7519; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=de39d0427733ca0f22fbccb0b46740a9;
GM13976  CTCF (07-729)1wgEncodeEH003443SignalwgEncodeEH003448GSM10068853.9 GBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7535; setType=exp; labVersion=fseq v 1.84, iff_GM13976; tableName=wgEncodeOpenChromChipGm13976CtcfSigRep1; md5sum=1880210c47caeb57354e0fde0edaf029;
GM13976  CTCF (07-729)2wgEncodeEH003443Raw datawgEncodeEH003448GSM1006885495 MBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7535; setType=exp; md5sum=d3bea05397849b4e42f539a27abd0c28;
GM13976  CTCF (07-729)1wgEncodeEH003443Raw datawgEncodeEH003448GSM1006885651 MBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7535; setType=exp; md5sum=83e29b5ac2df5280173b88659536655d;
GM13976  CTCF (07-729)1wgEncodeEH003443PeakswgEncodeEH003448GSM10068851.1 MBnarrowPeak2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7535; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGm13976CtcfPkRep1; md5sum=f278cb91792ef81d2044e690f4f945fb;
GM13976  CTCF (07-729)1wgEncodeEH003443Base overlap signalwgEncodeEH003448GSM1006885980 MBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7535; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm13976CtcfBaseOverlapSignalRep1; md5sum=0514a61ae9a5680a0efbf2181cf32fe9;
GM13976  CTCF (07-729)2wgEncodeEH003443AlignmentswgEncodeEH003448  5.7 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7535; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=5c854671ac8aacf1aac51d59b52dbda7;
GM13976  CTCF (07-729)2wgEncodeEH003443AlignmentswgEncodeEH003448  479 MBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7535; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=eb5338455d8a39ac2a2276b0bb3e7170;
GM13976  CTCF (07-729)1wgEncodeEH003443AlignmentswgEncodeEH003448  5.8 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7535; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=735b47f055c0dcafa0037a89c7934786;
GM13976  CTCF (07-729)1wgEncodeEH003443AlignmentswgEncodeEH003448  633 MBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7535; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=2b67f0153f33ad1c3bf114d5f8d61fa9;
GM13977  Input  wgEncodeEH003444SignalwgEncodeEH003444GSM10068894.6 GBbigWig2012-07-252013-04-25dataVersion=ENCODE Jul 2012 Freeze; subId=7520; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipGm13977InputSig; md5sum=25dffdfcc95cefff7b67daea6c42b4cf;
GM13977  Input  wgEncodeEH003444Raw datawgEncodeEH003444GSM10068891.5 GBfastq2012-07-252013-04-25dataVersion=ENCODE Jul 2012 Freeze; subId=7520; setType=input; md5sum=a4583503f0153241cd91412921e25681;
GM13977  Input  wgEncodeEH003444AlignmentswgEncodeEH003444  6.2 MBbam.bai2012-07-252013-04-25dataVersion=ENCODE Jul 2012 Freeze; subId=7520; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=b1284fb2db3c8930472953752791f4b5;
GM13977  Input  wgEncodeEH003444AlignmentswgEncodeEH003444  1.4 GBbam2012-07-252013-04-25dataVersion=ENCODE Jul 2012 Freeze; subId=7520; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=0f536a739c7b3910c543f1b2871eb79e;
GM13977  CTCF (07-729)1wgEncodeEH003444SignalwgEncodeEH003456GSM10068694.0 GBbigWig2012-07-272013-04-27dataVersion=ENCODE Jul 2012 Freeze; subId=7536; setType=exp; labVersion=fseq v 1.84, iff_GM13977; tableName=wgEncodeOpenChromChipGm13977CtcfSigRep1; md5sum=1b016a41351fcaf03ca3d0a7d979a58e;
GM13977  CTCF (07-729)2wgEncodeEH003444Raw datawgEncodeEH003456GSM10068691.2 GBfastq2012-07-272013-04-27dataVersion=ENCODE Jul 2012 Freeze; subId=7536; setType=exp; md5sum=86701dc150916d05d771ebed8c6cc109;
GM13977  CTCF (07-729)1wgEncodeEH003444Raw datawgEncodeEH003456GSM1006869664 MBfastq2012-07-272013-04-27dataVersion=ENCODE Jul 2012 Freeze; subId=7536; setType=exp; md5sum=a869507063ac422368a9b9469b03d8bd;
GM13977  CTCF (07-729)1wgEncodeEH003444PeakswgEncodeEH003456GSM10068691.1 MBnarrowPeak2012-07-272013-04-27dataVersion=ENCODE Jul 2012 Freeze; subId=7536; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGm13977CtcfPkRep1; md5sum=6a2827fa697268cc04fce7b8ecc31f4d;
GM13977  CTCF (07-729)1wgEncodeEH003444Base overlap signalwgEncodeEH003456GSM10068691.1 GBbigWig2012-07-272013-04-27dataVersion=ENCODE Jul 2012 Freeze; subId=7536; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm13977CtcfBaseOverlapSignalRep1; md5sum=916bf456e0eee8096fb9a099f007fd79;
GM13977  CTCF (07-729)2wgEncodeEH003444AlignmentswgEncodeEH003456  6.0 MBbam.bai2012-07-272013-04-27dataVersion=ENCODE Jul 2012 Freeze; subId=7536; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=fd63b2e526118eaf6805d171a7841f09;
GM13977  CTCF (07-729)2wgEncodeEH003444AlignmentswgEncodeEH003456  1.1 GBbam2012-07-272013-04-27dataVersion=ENCODE Jul 2012 Freeze; subId=7536; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=9be0746f9ab268ffe720a4de9c12b8d8;
GM13977  CTCF (07-729)1wgEncodeEH003444AlignmentswgEncodeEH003456  5.8 MBbam.bai2012-07-272013-04-27dataVersion=ENCODE Jul 2012 Freeze; subId=7536; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=8ebb4129d7c42121e36f4481a11f069c;
GM13977  CTCF (07-729)1wgEncodeEH003444AlignmentswgEncodeEH003456  598 MBbam2012-07-272013-04-27dataVersion=ENCODE Jul 2012 Freeze; subId=7536; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=1ce9efbc1af4635b7156421cfcd9f516;
GM19238NoneCTCF (07-729)  generic_femaleSignalwgEncodeEH000570GSM8222783.9 GBbigWig2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1516; setType=exp; labVersion=fseq v 1.84, iff_generic_female; tableName=wgEncodeOpenChromChipGm19238CtcfSig; md5sum=929da66e7c4cf42d4f52e2d52c265e83;
GM19238NoneCTCF (07-729)1generic_femaleRaw datawgEncodeEH000570GSM822278595 MBfastq2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=646; setType=exp; md5sum=07373500f01bce3a0972539a4b2ef05c;
GM19238NoneCTCF (07-729)2generic_femaleRaw datawgEncodeEH000570GSM822278580 MBfastq2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=646; setType=exp; md5sum=d409893fcecbd001bf148b23977fc1c8;
GM19238NoneCTCF (07-729)  generic_femalePeakswgEncodeEH000570GSM8222781.1 MBnarrowPeak2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1516; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGm19238CtcfPk; md5sum=fc1b839efa8f54f75eb47cc6803b478c;
GM19238NoneCTCF (07-729)  generic_femaleBase overlap signalwgEncodeEH000570GSM822278154 MBbigWig2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1516; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm19238CtcfBaseOverlapSignal; md5sum=fdf68c14d53504d5593842073c002d1f;
GM19238NoneCTCF (07-729)1generic_femaleAlignmentswgEncodeEH000570GSM8222785.6 MBbam.bai2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1516; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=d724e739ede4539b62d9cd36e1d4741f;
GM19238NoneCTCF (07-729)1generic_femaleAlignmentswgEncodeEH000570GSM822278607 MBbam2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1516; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=261bc5471368995fa812d11ad10cdb00;
GM19238NoneCTCF (07-729)2generic_femaleAlignmentswgEncodeEH000570GSM8222785.6 MBbam.bai2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1516; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=3b9ce91df82eb05097c2d8606bccd197;
GM19238NoneCTCF (07-729)2generic_femaleAlignmentswgEncodeEH000570GSM822278595 MBbam2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1516; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=d39f5a80b0557ea8cf7c534adcfb6edf;
GM19239NoneCTCF (07-729)  generic_maleSignalwgEncodeEH000571GSM8222774.6 GBbigWig2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1525; setType=exp; labVersion=fseq v 1.84, iff_generic_male; tableName=wgEncodeOpenChromChipGm19239CtcfSig; md5sum=a6f3b11d1c3ae388c0aaa16e4aeeb5bc;
GM19239NoneCTCF (07-729)1generic_maleRaw datawgEncodeEH000571GSM822277789 MBfastq2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=648; setType=exp; md5sum=5bc645a3b5ee7de9e8ccee37623ac7bb;
GM19239NoneCTCF (07-729)2generic_maleRaw datawgEncodeEH000571GSM822277171 MBfastq2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=648; setType=exp; md5sum=4945a7cffebee93482a650d31e5e4f74;
GM19239NoneCTCF (07-729)  generic_malePeakswgEncodeEH000571GSM8222771.3 MBnarrowPeak2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1525; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGm19239CtcfPk; md5sum=12e1b7e9a3f42051505faad4dcc6d71b;
GM19239NoneCTCF (07-729)  generic_maleBase overlap signalwgEncodeEH000571GSM822277146 MBbigWig2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1525; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm19239CtcfBaseOverlapSignal; md5sum=9a97a40c4bb6a13aa905d1782f27e4bc;
GM19239NoneCTCF (07-729)1generic_maleAlignmentswgEncodeEH000571GSM8222775.8 MBbam.bai2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1525; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=b7cafb68818f905c4af432876581c4d9;
GM19239NoneCTCF (07-729)1generic_maleAlignmentswgEncodeEH000571GSM822277797 MBbam2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1525; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=ccb9a29b87e6e2cbce5499f79c2cb8c4;
GM19239NoneCTCF (07-729)2generic_maleAlignmentswgEncodeEH000571GSM8222775.5 MBbam.bai2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1525; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=581be16a8ff1cc7b9ba7287dc3aaf83c;
GM19239NoneCTCF (07-729)2generic_maleAlignmentswgEncodeEH000571GSM822277176 MBbam2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1525; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=866bb0b95cd46b91e20519f20387172a;
GM19240NoneCTCF (07-729)  generic_femaleSignalwgEncodeEH000572GSM8222769.1 GBbigWig2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1536; setType=exp; labVersion=fseq v 1.84, iff_generic_female; tableName=wgEncodeOpenChromChipGm19240CtcfSig; md5sum=b07d0222385819e211056fb179022ec2;
GM19240NoneCTCF (07-729)1generic_femaleRaw datawgEncodeEH000572GSM822276568 MBfastq2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=650; setType=exp; md5sum=774b7d8eb142528fe79073a5344d3d43;
GM19240NoneCTCF (07-729)2generic_femaleRaw datawgEncodeEH000572GSM822276591 MBfastq2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=650; setType=exp; md5sum=e23d448d34c29350e90cf06279666b59;
GM19240NoneCTCF (07-729)  generic_femalePeakswgEncodeEH000572GSM8222761.1 MBnarrowPeak2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1536; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGm19240CtcfPk; md5sum=ec2da19aaf0112aa496eca7c788a7bb0;
GM19240NoneCTCF (07-729)  generic_femaleBase overlap signalwgEncodeEH000572GSM822276145 MBbigWig2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1536; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm19240CtcfBaseOverlapSignal; md5sum=595e2946698d0d9719b42c39b2b6c33c;
GM19240NoneCTCF (07-729)1generic_femaleAlignmentswgEncodeEH000572GSM8222765.6 MBbam.bai2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1536; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=43c3a3ac3d8bdcc32689366d82d1b5d4;
GM19240NoneCTCF (07-729)1generic_femaleAlignmentswgEncodeEH000572GSM822276562 MBbam2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1536; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=ca212abe7c98829cb8e7d52576e459d2;
GM19240NoneCTCF (07-729)2generic_femaleAlignmentswgEncodeEH000572GSM8222765.6 MBbam.bai2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1536; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=fe0d1c89b2ad06dec69f505272168d16;
GM19240NoneCTCF (07-729)2generic_femaleAlignmentswgEncodeEH000572GSM822276606 MBbam2009-10-062010-07-06origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1536; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=37f25389cf72fa497dd83156f1ae1520;
GM20000  Input  wgEncodeEH003449SignalwgEncodeEH003449GSM10068844.6 GBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7521; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipGm20000InputSig; md5sum=3d79a65a35f200bb5cada2dbb93e8616;
GM20000  Input  wgEncodeEH003449Raw datawgEncodeEH003449GSM10068841.4 GBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7521; setType=input; md5sum=e1fe7e384279493e5b3387d20da7c4ca;
GM20000  Input  wgEncodeEH003449AlignmentswgEncodeEH003449  6.1 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7521; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=e5b004c230376cff3ff1c62b3770af49;
GM20000  Input  wgEncodeEH003449AlignmentswgEncodeEH003449  1.2 GBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7521; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=109799ecae745cfc4ad5a73eb9281f5f;
GM20000  CTCF (07-729)1wgEncodeEH003449SignalwgEncodeEH003458GSM10068734.0 GBbigWig2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7537; setType=exp; labVersion=fseq v 1.84, iff_20000; tableName=wgEncodeOpenChromChipGm20000CtcfSigRep1; md5sum=e1aed1565942b2f5eed433656d6a2829;
GM20000  CTCF (07-729)2wgEncodeEH003449Raw datawgEncodeEH003458GSM1006873542 MBfastq2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7537; setType=exp; md5sum=f665d08a43cacb085c4c34a0dec50d3b;
GM20000  CTCF (07-729)1wgEncodeEH003449Raw datawgEncodeEH003458GSM1006873474 MBfastq2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7537; setType=exp; md5sum=b66ddc281fc8913fec16f228c3721679;
GM20000  CTCF (07-729)1wgEncodeEH003449PeakswgEncodeEH003458GSM10068731.2 MBnarrowPeak2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7537; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGm20000CtcfPkRep1; md5sum=77b2e33066eabb4c798a3872b8a72c11;
GM20000  CTCF (07-729)1wgEncodeEH003449Base overlap signalwgEncodeEH003458GSM1006873969 MBbigWig2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7537; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGm20000CtcfBaseOverlapSignalRep1; md5sum=759014cf5f0ca2e70edfd42264677a89;
GM20000  CTCF (07-729)2wgEncodeEH003449AlignmentswgEncodeEH003458  5.8 MBbam.bai2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7537; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=7e7d0c1110e23f4decee64036c6501de;
GM20000  CTCF (07-729)2wgEncodeEH003449AlignmentswgEncodeEH003458  480 MBbam2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7537; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=5bfcb2932d1e88a1ec0b4fc20448f0c0;
GM20000  CTCF (07-729)1wgEncodeEH003449AlignmentswgEncodeEH003458  5.8 MBbam.bai2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7537; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=938fa77110a75318483e2c7ca001c668;
GM20000  CTCF (07-729)1wgEncodeEH003449AlignmentswgEncodeEH003458  491 MBbam2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7537; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=a50fd7fa5ff7c9bd4e94a5cf5651ac98;
GlioblaNoneCTCF (07-729)  wgEncodeEH001129SignalwgEncodeEH001135GSM8223034.6 GBbigWig2010-10-202011-07-19origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2516; setType=exp; labVersion=fseq v 1.84, iff_H54; tableName=wgEncodeOpenChromChipGlioblaCtcfSig; md5sum=7dfd806cf4dbbfa9980babf5711ab159;
GlioblaNoneCTCF (07-729)1wgEncodeEH001129AlignmentswgEncodeEH001135GSM8223036.1 MBbam.bai2010-10-202011-07-19origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2516; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=8bd066791f332a1eb187c003555e53be;
GlioblaNoneCTCF (07-729)1wgEncodeEH001129AlignmentswgEncodeEH001135GSM8223031.4 GBbam2010-10-202011-07-19origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2516; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=cb9ad3b39b54948ca0e0b13de3f9155b;
GlioblaNoneCTCF (07-729)1wgEncodeEH001129Raw datawgEncodeEH001135GSM8223031.4 GBfastq2010-10-202011-07-19origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2516; setType=exp; md5sum=849b9f6f615b1d7c8aa3622a9687274e;
GlioblaNoneCTCF (07-729)2wgEncodeEH001129Raw datawgEncodeEH001135GSM8223031.3 GBfastq2010-10-202011-07-19origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2516; setType=exp; md5sum=ed32408f66371c6e766d1035a501d070;
GlioblaNoneCTCF (07-729)  wgEncodeEH001129PeakswgEncodeEH001135GSM8223031.1 MBnarrowPeak2010-10-202011-07-19origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2516; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGlioblaCtcfPkRep1; md5sum=e27c1acde99518f5f34f251f54c957a2;
GlioblaNoneCTCF (07-729)  wgEncodeEH001129Base overlap signalwgEncodeEH001135GSM822303464 MBbigWig2010-10-202011-07-19origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2516; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGlioblaCtcfBaseOverlapSignal; md5sum=a08838e65d616457cd30fadae6f7a3e1;
GlioblaNoneCTCF (07-729)2wgEncodeEH001129AlignmentswgEncodeEH001135GSM8223036.1 MBbam.bai2010-10-202011-07-19origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2516; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=8c69c942b7dcb4dfd06f995b086e3c58;
GlioblaNoneCTCF (07-729)2wgEncodeEH001129AlignmentswgEncodeEH001135GSM8223031.3 GBbam2010-10-202011-07-19origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2516; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=17cceba0c599059404c86a9b538331f5;
GlioblaNoneInput  wgEncodeEH001129SignalwgEncodeEH001129GSM8222684.4 GBbigWig2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2499; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipGlioblaInputSig; md5sum=ec236967dbddff045a95b8762ee6839f;
GlioblaNoneInput  wgEncodeEH001129Raw datawgEncodeEH001129GSM8222681.2 GBfastq2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2499; setType=input; md5sum=b1fb67288714bb4a83d4f087718c4a6d;
GlioblaNoneInput  wgEncodeEH001129AlignmentswgEncodeEH001129GSM8222686.3 MBbam.bai2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2499; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=9888201b3955aa46bbb8fbb30b41c983;
GlioblaNoneInput  wgEncodeEH001129AlignmentswgEncodeEH001129GSM8222681.4 GBbam2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2499; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=b09f98aa75167ac425faee948d1fe94f;
GlioblaNonePOL2 (MMS-126R)  wgEncodeEH001129SignalwgEncodeEH001136GSM8223022.6 GBbigWig2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3272; setType=exp; labVersion=fseq v 1.84, iff_H54; tableName=wgEncodeOpenChromChipGlioblaPol2Sig; md5sum=dea5a9191b4693da6421a0c35fbca3b0;
GlioblaNonePOL2 (MMS-126R)1wgEncodeEH001129AlignmentswgEncodeEH001136GSM8223025.8 MBbam.bai2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3272; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=4261b7f21d61de4bc912c6aeb40ffae0;
GlioblaNonePOL2 (MMS-126R)1wgEncodeEH001129AlignmentswgEncodeEH001136GSM822302726 MBbam2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3272; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=e2f98f53ef44d375a9a5fd4c5e6e9512;
GlioblaNonePOL2 (MMS-126R)1wgEncodeEH001129Raw datawgEncodeEH001136GSM822302933 MBfastq2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3272; setType=exp; md5sum=11a3ad89c2effc4ea915a3f996c4eec0;
GlioblaNonePOL2 (MMS-126R)2wgEncodeEH001129AlignmentswgEncodeEH001136GSM8223025.7 MBbam.bai2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3272; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=1706d39abde8bb827302ca42b794bfe1;
GlioblaNonePOL2 (MMS-126R)2wgEncodeEH001129AlignmentswgEncodeEH001136GSM822302527 MBbam2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3272; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=7911b09080f688105056bf22c0dcf1b3;
GlioblaNonePOL2 (MMS-126R)2wgEncodeEH001129Raw datawgEncodeEH001136GSM822302846 MBfastq2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3272; setType=exp; md5sum=e828cc6ce8470b3c74c3d9a3a9fe7b4e;
GlioblaNonePOL2 (MMS-126R)  wgEncodeEH001129PeakswgEncodeEH001136GSM8223021.1 MBnarrowPeak2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3272; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipGlioblaPol2PkRep1; md5sum=97a044a6db51ad201006ae8fa72c21f6;
GlioblaNonePOL2 (MMS-126R)  wgEncodeEH001129Base overlap signalwgEncodeEH001136GSM8223021.1 GBbigWig2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3272; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipGlioblaPol2BaseOverlapSignal; md5sum=d39e100ae543ad90c4d0092a6c0436f9;
H1-hESCNoneCTCF (07-729)  generic_maleSignalwgEncodeEH000560GSM8222972.9 GBbigWig2009-10-012010-07-01origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1500; setType=exp; labVersion=fseq v 1.84, iff_generic_male; tableName=wgEncodeOpenChromChipH1hescCtcfSig; md5sum=b22bd7d64bd459f3fd07ac0202fa48fd;
H1-hESCNoneCTCF (07-729)  generic_maleRaw datawgEncodeEH000560GSM822297543 MBfastq2009-10-012010-07-01origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=636; setType=exp; md5sum=10a7190630c1cf28e238423cb98b5cfa;
H1-hESCNoneCTCF (07-729)  generic_malePeakswgEncodeEH000560GSM8222971.4 MBnarrowPeak2009-10-012010-07-01origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1500; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipH1hescCtcfPk; md5sum=f184dbeabc74f58f3dcf39b997556962;
H1-hESCNoneCTCF (07-729)  generic_maleBase overlap signalwgEncodeEH000560GSM822297 94 MBbigWig2009-10-012010-07-01origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1500; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipH1hescCtcfBaseOverlapSignal; md5sum=bebcc1e380b2317d8dc84e8c0fec2487;
H1-hESCNoneCTCF (07-729)1generic_maleAlignmentswgEncodeEH000560GSM8222975.7 MBbam.bai2009-10-012010-07-01origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1500; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=73f413971720b7930a99497f50090105;
H1-hESCNoneCTCF (07-729)1generic_maleAlignmentswgEncodeEH000560GSM822297553 MBbam2009-10-012010-07-01origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1500; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=da737f64a7e9d1e5c89af9d4e0d0e18d;
H1-hESCNonePOL2 (MMS-126R)  generic_maleSignalwgEncodeEH000563GSM8223002.0 GBbigWig2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-22; subId=1833; setType=exp; labVersion=fseq v 1.84, iff_generic_male; tableName=wgEncodeOpenChromChipH1hescPol2Sig; md5sum=9e81c4b450c321317f715180a6c34f9f;
H1-hESCNonePOL2 (MMS-126R)  generic_maleRaw datawgEncodeEH000563GSM822300790 MBfastq2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=641; setType=exp; md5sum=118d25425882ec15bc6159e2b1006fa9;
H1-hESCNonePOL2 (MMS-126R)  generic_malePeakswgEncodeEH000563GSM8223002.5 MBnarrowPeak2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-22; subId=1833; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipH1hescPol2Pk; md5sum=9574fdb9b41b1a550abb70dc98e89964;
H1-hESCNonePOL2 (MMS-126R)  generic_maleBase overlap signalwgEncodeEH000563GSM822300141 MBbigWig2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-22; subId=1833; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipH1hescPol2BaseOverlapSignal; md5sum=4220a3e55a2b03312dc54e617f9fca50;
H1-hESCNonePOL2 (MMS-126R)1generic_maleAlignmentswgEncodeEH000563GSM8223005.9 MBbam.bai2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-22; subId=1833; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=f8d23b0b281474fb1c8d6f00d7d2a26f;
H1-hESCNonePOL2 (MMS-126R)1generic_maleAlignmentswgEncodeEH000563GSM822300845 MBbam2009-10-022010-07-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-22; subId=1833; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=c6bf635d2aca79d018b187650ebda162;
H1-hESCNonec-Myc (sc-764)  generic_maleSignalwgEncodeEH000596GSM8222743.0 GBbigWig2009-12-282010-09-27origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1504; setType=exp; labVersion=fseq v 1.84, iff_generic_male; tableName=wgEncodeOpenChromChipH1hescCmycSig; md5sum=efd5f96ba4caa0366c5673243a107bb8;
H1-hESCNonec-Myc (sc-764)  generic_maleRaw datawgEncodeEH000596GSM822274848 MBfastq2009-12-282010-09-27origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; subId=882; setType=exp; md5sum=80eae886c68f29570bfa5c89ac6a0f6a;
H1-hESCNonec-Myc (sc-764)  generic_malePeakswgEncodeEH000596GSM822274337 KBnarrowPeak2009-12-282010-09-27origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1504; setType=exp; labVersion=p-value cutoff: 0.01; tableName=wgEncodeOpenChromChipH1hescCmycPk; md5sum=3babd9bdcb6dd59af96e8091adc56f05;
H1-hESCNonec-Myc (sc-764)  generic_maleBase overlap signalwgEncodeEH000596GSM822274 66 MBbigWig2009-12-282010-09-27origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1504; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipH1hescCmycBaseOverlapSignal; md5sum=70702c7a2b92ccc7cd47ed11913384d5;
H1-hESCNonec-Myc (sc-764)1generic_maleAlignmentswgEncodeEH000596GSM8222745.7 MBbam.bai2009-12-282010-09-27origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1504; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=97c5f9d1fda1ce2b46cc6fc4fc80b885;
H1-hESCNonec-Myc (sc-764)1generic_maleAlignmentswgEncodeEH000596GSM822274498 MBbam2009-12-282010-09-27origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1504; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=cf878eea152e6a33a95845a5c6c0365f;
HUVECNoneCTCF (07-729)  wgEncodeEH000550ValidationwgEncodeEH000551GSM822279 12 MBtgz2011-05-182012-02-18dataVersion=ENCODE Mar 2012 Freeze; subId=4161; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=22523937cc38103ddf57625577db7002;
HUVECNoneCTCF (07-729)  wgEncodeEH000550SignalwgEncodeEH000551GSM8222793.5 GBbigWig2009-09-252010-06-25origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1537; setType=exp; labVersion=fseq v 1.84, iff_HUVEC; tableName=wgEncodeOpenChromChipHuvecCtcfSig; md5sum=70630558c58e252c96f1ed6a4c7b420d;
HUVECNoneCTCF (07-729)1wgEncodeEH000550AlignmentswgEncodeEH000551GSM8222795.7 MBbam.bai2009-09-252010-06-25origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1537; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=ed0f1fe793e356f7d199a9aae535698f;
HUVECNoneCTCF (07-729)1wgEncodeEH000550AlignmentswgEncodeEH000551GSM822279400 MBbam2009-09-252010-06-25origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1537; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=630474c9b8d2e6020f4e77eb71966b50;
HUVECNoneCTCF (07-729)1wgEncodeEH000550Raw datawgEncodeEH000551GSM822279357 MBfastq2009-09-252010-06-25origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=548; setType=exp; md5sum=27774230b1d8e487d14960b579c92a06;
HUVECNoneCTCF (07-729)2wgEncodeEH000550AlignmentswgEncodeEH000551GSM8222795.7 MBbam.bai2009-09-252010-06-25origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1537; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=94fd7c76855cf0ab6e3538c245192249;
HUVECNoneCTCF (07-729)2wgEncodeEH000550AlignmentswgEncodeEH000551GSM822279442 MBbam2009-09-252010-06-25origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1537; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=ab0804b9fda67f8ad14f6fff793659b6;
HUVECNoneCTCF (07-729)2wgEncodeEH000550Raw datawgEncodeEH000551GSM822279398 MBfastq2009-09-252010-06-25origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=548; setType=exp; md5sum=74b5a7630b8685d94f76343594d3b641;
HUVECNoneCTCF (07-729)  wgEncodeEH000550PeakswgEncodeEH000551GSM8222791.0 MBnarrowPeak2009-09-252010-06-25origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1537; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipHuvecCtcfPk; md5sum=822b039ee9aa4e2e5c8813657c2a970f;
HUVECNoneCTCF (07-729)  wgEncodeEH000550Base overlap signalwgEncodeEH000551GSM822279141 MBbigWig2009-09-252010-06-25origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1537; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipHuvecCtcfBaseOverlapSignal; md5sum=3f9125377300a4366db589d1b6105ee1;
HUVECNoneInput  wgEncodeEH000550SignalwgEncodeEH000550GSM8222804.0 GBbigWig2009-09-242010-06-24origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-18; subId=1607; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipHuvecInputSig; md5sum=4ca75b710935db81dc09a4f2a9d5cecc;
HUVECNoneInput  wgEncodeEH000550Raw datawgEncodeEH000550GSM822280486 MBfastq2009-09-242010-06-24origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=544; setType=input; md5sum=1243f5fc0b82f2f059ddf6b81c886a82;
HUVECNoneInput  wgEncodeEH000550AlignmentswgEncodeEH000550GSM8222805.8 MBbam.bai2009-09-242010-06-24origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-18; subId=1607; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=d459b48986547c7ddd0529f3ed96b8f2;
HUVECNoneInput  wgEncodeEH000550AlignmentswgEncodeEH000550GSM822280554 MBbam2009-09-242010-06-24origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-18; subId=1607; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=1d0b2378e7327fefb5b81a7fe9029251;
HUVECNonePOL2 (MMS-126R)  wgEncodeEH000550SignalwgEncodeEH000552GSM8223061.8 GBbigWig2009-09-282010-06-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1540; setType=exp; labVersion=fseq v 1.84, iff_HUVEC; tableName=wgEncodeOpenChromChipHuvecPol2Sig; md5sum=62b70e1aee65e9e41e4717139f88343b;
HUVECNonePOL2 (MMS-126R)1wgEncodeEH000550AlignmentswgEncodeEH000552GSM8223065.5 MBbam.bai2009-09-282010-06-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1540; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=b770c00d83caffdd4df46dc8910c00c4;
HUVECNonePOL2 (MMS-126R)1wgEncodeEH000550AlignmentswgEncodeEH000552GSM822306352 MBbam2009-09-282010-06-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1540; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=700ce1f6710422d57b69106ee0dd3203;
HUVECNonePOL2 (MMS-126R)1wgEncodeEH000550Raw datawgEncodeEH000552GSM822306383 MBfastq2009-09-282010-06-28origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=552; setType=exp; md5sum=c950e3248495e3952a5f5d9676d97ebe;
HUVECNonePOL2 (MMS-126R)2wgEncodeEH000550AlignmentswgEncodeEH000552GSM8223065.7 MBbam.bai2009-09-282010-06-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1540; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=9b6e06f63ecf526e093f75a6ccce568a;
HUVECNonePOL2 (MMS-126R)2wgEncodeEH000550AlignmentswgEncodeEH000552GSM822306510 MBbam2009-09-282010-06-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1540; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=2106c8f9eeb67d68b6057d6c9e3f7187;
HUVECNonePOL2 (MMS-126R)2wgEncodeEH000550Raw datawgEncodeEH000552GSM822306495 MBfastq2009-09-282010-06-28origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=552; setType=exp; md5sum=2335dfc6e65ba78aac14af943101b0f2;
HUVECNonePOL2 (MMS-126R)  wgEncodeEH000550PeakswgEncodeEH000552GSM8223062.3 MBnarrowPeak2009-09-282010-06-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1540; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipHuvecPol2Pk; md5sum=b77f6a78edd00ce73c3c9d4bdee43cbc;
HUVECNonePOL2 (MMS-126R)  wgEncodeEH000550Base overlap signalwgEncodeEH000552GSM822306121 MBbigWig2009-09-282010-06-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1540; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipHuvecPol2BaseOverlapSignal; md5sum=d93b6d9a8f45fec2722b7077f4ebe844;
HUVECNonec-Myc (sc-764)  wgEncodeEH000550SignalwgEncodeEH000561GSM8222982.9 GBbigWig2009-10-012010-07-01origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1542; setType=exp; labVersion=fseq v 1.84, iff_HUVEC; tableName=wgEncodeOpenChromChipHuvecCmycSig; md5sum=10293e34b061c92348c8eeb2c40b2795;
HUVECNonec-Myc (sc-764)1wgEncodeEH000550Raw datawgEncodeEH000561GSM8222981015 MBfastq2009-10-012010-07-01origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=635; setType=exp; md5sum=760dbd85983c80cae6f30ca06d98d94e;
HUVECNonec-Myc (sc-764)  wgEncodeEH000550PeakswgEncodeEH000561GSM822298932 KBnarrowPeak2009-10-012010-07-01origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1542; setType=exp; labVersion=p-value cutoff: 0.01; tableName=wgEncodeOpenChromChipHuvecCmycPk; md5sum=7d4ce26014fe47628cf45bf77bb5c3b2;
HUVECNonec-Myc (sc-764)  wgEncodeEH000550Base overlap signalwgEncodeEH000561GSM822298102 MBbigWig2009-10-012010-07-01origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1542; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipHuvecCmycBaseOverlapSignal; md5sum=6b7e43c82e2615417557623cf43f945e;
HUVECNonec-Myc (sc-764)1wgEncodeEH000550AlignmentswgEncodeEH000561GSM8222985.8 MBbam.bai2009-10-012010-07-01origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1542; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=e516956e349fe926654c9b313d7feb77;
HUVECNonec-Myc (sc-764)1wgEncodeEH000550AlignmentswgEncodeEH000561GSM822298625 MBbam2009-10-012010-07-01origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1542; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=b2253794c1f7fa0a60c442a3b35a96cc;
HeLa-S3NoneCTCF (07-729)  wgEncodeEH000539ValidationwgEncodeEH000541GSM822285 24 MBtgz2011-05-182012-02-18dataVersion=ENCODE Mar 2012 Freeze; subId=4161; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=88185a631c09336b00d44c347d63b33f;
HeLa-S3NoneCTCF (07-729)  wgEncodeEH000539SignalwgEncodeEH000541GSM8222854.5 GBbigWig2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1499; setType=exp; labVersion=fseq v 1.84, iff_HelaS3; tableName=wgEncodeOpenChromChipHelas3CtcfSig; md5sum=c2ad03507a59f4494f225cc6ea8e0825;
HeLa-S3NoneCTCF (07-729)1wgEncodeEH000539AlignmentswgEncodeEH000541GSM8222855.7 MBbam.bai2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1499; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=bfb553a4887e09a3ac0750bf6f288827;
HeLa-S3NoneCTCF (07-729)1wgEncodeEH000539AlignmentswgEncodeEH000541GSM822285568 MBbam2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1499; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=2b65880e833378cc733a722988a276bd;
HeLa-S3NoneCTCF (07-729)1wgEncodeEH000539Raw datawgEncodeEH000541GSM822285546 MBfastq2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-10; subId=493; setType=exp; md5sum=cc6dede9ef9834b2b68ff569789bea6e;
HeLa-S3NoneCTCF (07-729)2wgEncodeEH000539AlignmentswgEncodeEH000541GSM8222855.6 MBbam.bai2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1499; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=568f36edd41c082e85cb210c857606d2;
HeLa-S3NoneCTCF (07-729)2wgEncodeEH000539AlignmentswgEncodeEH000541GSM822285492 MBbam2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1499; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=229c4ad186d379815cd294f20cc8d6ea;
HeLa-S3NoneCTCF (07-729)2wgEncodeEH000539Raw datawgEncodeEH000541GSM822285480 MBfastq2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-10; subId=493; setType=exp; md5sum=fe0a03481b3d2f4de90dedeab1cd8f7b;
HeLa-S3NoneCTCF (07-729)  wgEncodeEH000539PeakswgEncodeEH000541GSM8222851.4 MBnarrowPeak2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1499; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipHelas3CtcfPk; md5sum=96fd9d6f3d25f6cfd8b0b3a88de4b7b7;
HeLa-S3NoneCTCF (07-729)  wgEncodeEH000539Base overlap signalwgEncodeEH000541GSM822285157 MBbigWig2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1499; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipHelas3CtcfBaseOverlapSignal; md5sum=07839dee5546df25753bc24b05650477;
HeLa-S3NoneInput  wgEncodeEH000539SignalwgEncodeEH000539GSM8223133.5 GBbigWig2009-03-162009-12-16origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-18; subId=1609; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipHelas3InputSig; md5sum=a0586cf612d6f9498c8f9d7153f4dcaf;
HeLa-S3NoneInput  wgEncodeEH000539Raw datawgEncodeEH000539GSM822313402 MBfastq2009-03-162009-12-16origAssembly=hg18; dataVersion=ENCODE Feb 2009 Freeze; subId=275; setType=input; labVersion=Illumina, pooled; md5sum=44654f51fcfcec8d2dd4edcd880fb533;
HeLa-S3NoneInput  wgEncodeEH000539AlignmentswgEncodeEH000539GSM8223135.6 MBbam.bai2009-03-162009-12-16origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-18; subId=1609; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=ba25f6ea085eb5013657ae90da96aec5;
HeLa-S3NoneInput  wgEncodeEH000539AlignmentswgEncodeEH000539GSM822313413 MBbam2009-03-162009-12-16origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-18; subId=1609; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=e3e3b38e6df3b0ca68360c84ca05373f;
HeLa-S3NonePOL2 (MMS-126R)  wgEncodeEH000539ValidationwgEncodeEH000597GSM822273 24 MBtgz2011-05-182012-02-18dataVersion=ENCODE Mar 2012 Freeze; subId=4161; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=34865f200442fa5564697487fb17c48e;
HeLa-S3NonePOL2 (MMS-126R)  wgEncodeEH000539SignalwgEncodeEH000597GSM8222731.8 GBbigWig2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1505; setType=exp; labVersion=fseq v 1.84, iff_HelaS3; tableName=wgEncodeOpenChromChipHelas3Pol2Sig; md5sum=c985a92e67392524fd9c286a911897c4;
HeLa-S3NonePOL2 (MMS-126R)1wgEncodeEH000539AlignmentswgEncodeEH000597GSM8222735.5 MBbam.bai2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1505; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=629ad4dabbfe02d89dcf8fe20906adbb;
HeLa-S3NonePOL2 (MMS-126R)1wgEncodeEH000539AlignmentswgEncodeEH000597GSM822273270 MBbam2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1505; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=8d8a3c7e5d4608dee152ba15c295d39d;
HeLa-S3NonePOL2 (MMS-126R)1wgEncodeEH000539Raw datawgEncodeEH000597GSM822273254 MBfastq2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; subId=885; setType=exp; md5sum=6d03920b23df44c9b2c131fd65aa4c92;
HeLa-S3NonePOL2 (MMS-126R)2wgEncodeEH000539AlignmentswgEncodeEH000597GSM8222735.7 MBbam.bai2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1505; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=60a66b66d7e57e4df08a974859b41509;
HeLa-S3NonePOL2 (MMS-126R)2wgEncodeEH000539AlignmentswgEncodeEH000597GSM822273347 MBbam2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1505; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=fc36a0db2084920b756ce159d1d4afd9;
HeLa-S3NonePOL2 (MMS-126R)2wgEncodeEH000539Raw datawgEncodeEH000597GSM822273421 MBfastq2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-12-23; subId=3141; setType=exp; md5sum=87e64f48658b0be49698f0d4ba6f127e;
HeLa-S3NonePOL2 (MMS-126R)  wgEncodeEH000539PeakswgEncodeEH000597GSM8222731.9 MBnarrowPeak2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1505; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipHelas3Pol2Pk; md5sum=edcfd33a19590f9c6be568e40d917e47;
HeLa-S3NonePOL2 (MMS-126R)  wgEncodeEH000539Base overlap signalwgEncodeEH000597GSM822273116 MBbigWig2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1505; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipHelas3Pol2BaseOverlapSignal; md5sum=cfe43f3b2e4d38c2a05fc1d9bfc5a558;
HeLa-S3Nonec-Myc (sc-764)  wgEncodeEH000539ValidationwgEncodeEH000542GSM822286 48 MBtgz2011-05-182012-02-18dataVersion=ENCODE Mar 2012 Freeze; subId=4161; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=98b048f424a4efa688b855649491c915;
HeLa-S3Nonec-Myc (sc-764)  wgEncodeEH000539SignalwgEncodeEH000542GSM8222862.9 GBbigWig2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1501; setType=exp; labVersion=fseq v 1.84, iff_HelaS3; tableName=wgEncodeOpenChromChipHelas3CmycSig; md5sum=8c2fdb3ea1cca541b094847c75db51b9;
HeLa-S3Nonec-Myc (sc-764)1wgEncodeEH000539AlignmentswgEncodeEH000542GSM8222865.6 MBbam.bai2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1501; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=54f8022100d93e7de3563b0d8dd1057c;
HeLa-S3Nonec-Myc (sc-764)1wgEncodeEH000539AlignmentswgEncodeEH000542GSM822286312 MBbam2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1501; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=7b7e1ee1d1761a9bfce909a3b9457c92;
HeLa-S3Nonec-Myc (sc-764)1wgEncodeEH000539Raw datawgEncodeEH000542GSM822286298 MBfastq2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-10-05; subId=642; setType=exp; md5sum=0174582a01bae667f78c9c297bd1ea3e;
HeLa-S3Nonec-Myc (sc-764)2wgEncodeEH000539AlignmentswgEncodeEH000542GSM8222865.6 MBbam.bai2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1501; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=325eab0b2936de7c94706c9b97e7b2bf;
HeLa-S3Nonec-Myc (sc-764)2wgEncodeEH000539AlignmentswgEncodeEH000542GSM822286320 MBbam2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1501; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=051d25b8dea30181a64ddc9e1088a9dc;
HeLa-S3Nonec-Myc (sc-764)2wgEncodeEH000539Raw datawgEncodeEH000542GSM822286306 MBfastq2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-10-05; subId=642; setType=exp; md5sum=0a68c601fabbdb3422d41842e2e29842;
HeLa-S3Nonec-Myc (sc-764)  wgEncodeEH000539PeakswgEncodeEH000542GSM822286266 KBnarrowPeak2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1501; setType=exp; labVersion=p-value cutoff: 0.01; tableName=wgEncodeOpenChromChipHelas3CmycPk; md5sum=fdb401701d25d6e7aa7309739253846d;
HeLa-S3Nonec-Myc (sc-764)  wgEncodeEH000539Base overlap signalwgEncodeEH000542GSM822286102 MBbigWig2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1501; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipHelas3CmycBaseOverlapSignal; md5sum=e9bbf86b1b80a401cdcb6b16327b5297;
Heart_OC  Input  wgEncodeEH003450SignalwgEncodeEH003450GSM10068674.4 GBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7525; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipHeartocInputSig; md5sum=4278fc3e1a97afa21e4e88bc59a0ad7c;
Heart_OC  Input  wgEncodeEH003450Raw datawgEncodeEH003450GSM10068671.4 GBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7525; setType=input; md5sum=7575c9c29fcae62309b8f4905ae38a77;
Heart_OC  Input  wgEncodeEH003450AlignmentswgEncodeEH003450  6.0 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7525; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=6b1365403e1c632f164bb299476232d7;
Heart_OC  Input  wgEncodeEH003450AlignmentswgEncodeEH003450  993 MBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7525; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=1b8a18558b3bf24e48e644178f05efc6;
HepG2NoneCTCF (07-729)  wgEncodeEH000538ValidationwgEncodeEH000543GSM822287 24 MBtgz2011-05-182012-02-18dataVersion=ENCODE Mar 2012 Freeze; subId=4161; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=9ebf789ffc7436d49712af26b5cdb04e;
HepG2NoneCTCF (07-729)  wgEncodeEH000538SignalwgEncodeEH000543GSM8222874.3 GBbigWig2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1517; setType=exp; labVersion=fseq v 1.84, iff_HepG2; tableName=wgEncodeOpenChromChipHepg2CtcfSig; md5sum=d33260c7525ff41275cf26d62229b776;
HepG2NoneCTCF (07-729)1wgEncodeEH000538Raw datawgEncodeEH000543GSM822287286 MBfastq2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-28; subId=555; setType=exp; md5sum=8265f525858edd5e00a75471499bc650;
HepG2NoneCTCF (07-729)2wgEncodeEH000538Raw datawgEncodeEH000543GSM822287276 MBfastq2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-28; subId=555; setType=exp; md5sum=3b236e74cf471a3f1c60dfd0599f6238;
HepG2NoneCTCF (07-729)  wgEncodeEH000538PeakswgEncodeEH000543GSM8222871.3 MBnarrowPeak2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1517; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipHepg2CtcfPk; md5sum=aefe60b388b602f45494cebd7fe7b00c;
HepG2NoneCTCF (07-729)  wgEncodeEH000538Base overlap signalwgEncodeEH000543GSM822287 96 MBbigWig2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1517; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipHepg2CtcfBaseOverlapSignal; md5sum=b7dce093849e8bf0299298b418d92985;
HepG2NoneCTCF (07-729)1wgEncodeEH000538AlignmentswgEncodeEH000543GSM8222875.6 MBbam.bai2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1517; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=632a1be255d83e4a8d17800df8826fc5;
HepG2NoneCTCF (07-729)1wgEncodeEH000538AlignmentswgEncodeEH000543GSM822287291 MBbam2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1517; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=0421dbb3a39f0fc2450920bd7f96a978;
HepG2NoneCTCF (07-729)2wgEncodeEH000538AlignmentswgEncodeEH000543GSM8222875.6 MBbam.bai2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1517; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=90132e85227b1b36ba70f867164ab85f;
HepG2NoneCTCF (07-729)2wgEncodeEH000538AlignmentswgEncodeEH000543GSM822287277 MBbam2009-03-212009-12-21origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1517; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=b9a0a82095cd5aba8ceb50cac4397c52;
HepG2NoneInput  wgEncodeEH000538SignalwgEncodeEH000538GSM8223143.5 GBbigWig2009-03-132009-12-13origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-18; subId=1608; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipHepg2InputSig; md5sum=fdbceaaf29af05ddf745da26e4cc2f36;
HepG2NoneInput  wgEncodeEH000538Raw datawgEncodeEH000538GSM822314465 MBfastq2009-03-132009-12-13origAssembly=hg18; dataVersion=ENCODE Feb 2009 Freeze; subId=274; setType=input; labVersion=Illumina, pooled; md5sum=4c7956a71015a34d68ab5f9930f0be94;
HepG2NoneInput  wgEncodeEH000538AlignmentswgEncodeEH000538GSM8223145.7 MBbam.bai2009-03-132009-12-13origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-18; subId=1608; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=e7fe8c85f567aaddf2df709ca36e0e3e;
HepG2NoneInput  wgEncodeEH000538AlignmentswgEncodeEH000538GSM822314471 MBbam2009-03-132009-12-13origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-18; subId=1608; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=45a4ec67c0ff64a23bccec6ac8624766;
HepG2NonePOL2 (MMS-126R)  wgEncodeEH000538ValidationwgEncodeEH000554GSM822284 24 MBtgz2011-05-182012-02-18dataVersion=ENCODE Mar 2012 Freeze; subId=4161; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=7ccb555ae66fce8818d8657a10815b0e;
HepG2NonePOL2 (MMS-126R)  wgEncodeEH000538SignalwgEncodeEH000554GSM8222841.7 GBbigWig2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1526; setType=exp; labVersion=fseq v 1.84, iff_HepG2; tableName=wgEncodeOpenChromChipHepg2Pol2Sig; md5sum=95bc2e50be5484c40556f4ec6172a27d;
HepG2NonePOL2 (MMS-126R)1wgEncodeEH000538AlignmentswgEncodeEH000554GSM8222845.6 MBbam.bai2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1526; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=bd7f186c9e8bce81dc8f9f3fc57002a3;
HepG2NonePOL2 (MMS-126R)1wgEncodeEH000538AlignmentswgEncodeEH000554GSM822284270 MBbam2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1526; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=d18a64ffdb81931877c11a0020670ee9;
HepG2NonePOL2 (MMS-126R)1wgEncodeEH000538Raw datawgEncodeEH000554  584 MBfastq2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-12-23; subId=3141; setType=exp; md5sum=603257a462a1010ba9d09d0266cc07b8;
HepG2NonePOL2 (MMS-126R)2wgEncodeEH000538AlignmentswgEncodeEH000554GSM8222845.6 MBbam.bai2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1526; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=eb31fc1e7053d3d4d70cd2c24c7c1c7b;
HepG2NonePOL2 (MMS-126R)2wgEncodeEH000538AlignmentswgEncodeEH000554GSM822284311 MBbam2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1526; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=1297a5ffc620f1c90726ca6fffa8b0c1;
HepG2NonePOL2 (MMS-126R)2wgEncodeEH000538Raw datawgEncodeEH000554GSM822284338 MBfastq2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=589; setType=exp; md5sum=355ea63de92cdab471b34b8da210a266;
HepG2NonePOL2 (MMS-126R)3wgEncodeEH000538Raw datawgEncodeEH000554GSM822284397 MBfastq2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=589; setType=exp; md5sum=20e856e8da4099c3ff8960322fe386b8;
HepG2NonePOL2 (MMS-126R)  wgEncodeEH000538PeakswgEncodeEH000554GSM8222843.6 MBnarrowPeak2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1526; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipHepg2Pol2Pk; md5sum=405b4330b21e58252dfa43bb6f4f244d;
HepG2NonePOL2 (MMS-126R)  wgEncodeEH000538Base overlap signalwgEncodeEH000554GSM822284149 MBbigWig2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1526; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipHepg2Pol2BaseOverlapSignal; md5sum=671bc68d811082fe82c6dfd433cf6154;
HepG2NonePOL2 (MMS-126R)3wgEncodeEH000538AlignmentswgEncodeEH000554GSM8222845.6 MBbam.bai2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1526; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=6fd8f8cd6999504d88ed769f168b51c9;
HepG2NonePOL2 (MMS-126R)3wgEncodeEH000538AlignmentswgEncodeEH000554GSM822284350 MBbam2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1526; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=302e27359693d38d8ffdb3d6e5657381;
HepG2Nonec-Myc (sc-764)  wgEncodeEH000538ValidationwgEncodeEH000545GSM822291 24 MBtgz2011-05-182012-02-18dataVersion=ENCODE Mar 2012 Freeze; subId=4161; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=ac8465e690ca7f90046ced7ae1f1a8b8;
HepG2Nonec-Myc (sc-764)  wgEncodeEH000538SignalwgEncodeEH000545GSM8222912.6 GBbigWig2009-03-222009-12-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1527; setType=exp; labVersion=fseq v 1.84, iff_HepG2; tableName=wgEncodeOpenChromChipHepg2CmycSig; md5sum=75e5d29e8fd52dedd1f086ff321930f9;
HepG2Nonec-Myc (sc-764)1wgEncodeEH000538AlignmentswgEncodeEH000545GSM8222915.7 MBbam.bai2009-03-222009-12-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1527; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=2080405a333e696e9010b14456f9a9c8;
HepG2Nonec-Myc (sc-764)1wgEncodeEH000538AlignmentswgEncodeEH000545GSM822291420 MBbam2009-03-222009-12-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1527; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=e16628ab15130e6327b04d7d0f94b608;
HepG2Nonec-Myc (sc-764)1wgEncodeEH000538Raw datawgEncodeEH000545GSM822291417 MBfastq2009-03-222009-12-22origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-29; subId=593; setType=exp; md5sum=f2fa084d57e032045dcacd669d11e268;
HepG2Nonec-Myc (sc-764)2wgEncodeEH000538AlignmentswgEncodeEH000545GSM822291294 MBbam2009-03-222009-12-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1527; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=0cc72233eef1f2bd1d0d106e1203823c;
HepG2Nonec-Myc (sc-764)2wgEncodeEH000538Raw datawgEncodeEH000545GSM822291285 MBfastq2009-03-222009-12-22origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-29; subId=593; setType=exp; md5sum=8807afa94c7be0451a1aef92d15ed3ac;
HepG2Nonec-Myc (sc-764)3wgEncodeEH000538Raw datawgEncodeEH000545GSM822291242 MBfastq2009-03-222009-12-22origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-29; subId=593; setType=exp; md5sum=55aaa5192ac5d2a668f2e23eab9b2823;
HepG2Nonec-Myc (sc-764)  wgEncodeEH000538PeakswgEncodeEH000545GSM822291786 KBnarrowPeak2009-03-222009-12-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1527; setType=exp; labVersion=p-value cutoff: 0.01; tableName=wgEncodeOpenChromChipHepg2CmycPk; md5sum=d2af1dbad600c784333d1548bd30442b;
HepG2Nonec-Myc (sc-764)  wgEncodeEH000538Base overlap signalwgEncodeEH000545GSM822291160 MBbigWig2009-03-222009-12-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1527; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipHepg2CmycBaseOverlapSignal; md5sum=74591ee7453fa9011cddd9b9b50f0eb6;
HepG2Nonec-Myc (sc-764)2wgEncodeEH000538AlignmentswgEncodeEH000545GSM8222915.6 MBbam.bai2009-03-222009-12-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1527; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=adbf9c964a6e7c94bb775ee1dfd075de;
HepG2Nonec-Myc (sc-764)3wgEncodeEH000538AlignmentswgEncodeEH000545GSM8222915.6 MBbam.bai2009-03-222009-12-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1527; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=f3ec1d19cf13fc0e9cfa9f04947c80f4;
HepG2Nonec-Myc (sc-764)3wgEncodeEH000538AlignmentswgEncodeEH000545GSM822291253 MBbam2009-03-222009-12-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-16; subId=1527; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=e0f9645f7a89419ed198e6cc81f9d740;
K562NoneCTCF (07-729)  wgEncodeEH000529ValidationwgEncodeEH000535GSM822311 48 MBtgz2011-03-212011-03-21dataVersion=ENCODE Mar 2012 Freeze; subId=3832; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=19a8516b14dad6f7216581b3e52c9e1e;
K562NoneCTCF (07-729)  wgEncodeEH000529SignalwgEncodeEH000535GSM8223113.3 GBbigWig2009-02-272009-11-27origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2011-01-12; subId=1538; setType=exp; labVersion=fseq v 1.84, iff_K562; tableName=wgEncodeOpenChromChipK562CtcfSig; md5sum=71923247a2a46e312b55a484700e8f5e;
K562NoneCTCF (07-729)1wgEncodeEH000529AlignmentswgEncodeEH000535GSM8223115.5 MBbam.bai2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1538; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=6cdcec5b93422fb1340edb76824043e1;
K562NoneCTCF (07-729)1wgEncodeEH000529AlignmentswgEncodeEH000535GSM822311266 MBbam2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1538; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=b6f045181f3c736fe61f1115a8f0769f;
K562NoneCTCF (07-729)1wgEncodeEH000529Raw datawgEncodeEH000535GSM822311258 MBfastq2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-08; subId=481; setType=exp; md5sum=e7d01096a547d126f43b37595ab9a73e;
K562NoneCTCF (07-729)2wgEncodeEH000529AlignmentswgEncodeEH000535GSM8223115.5 MBbam.bai2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1538; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=bb77343bea05e9c408ecd660221d000e;
K562NoneCTCF (07-729)2wgEncodeEH000529AlignmentswgEncodeEH000535GSM822311247 MBbam2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1538; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=ffca69645c43876754c54eadf64fbd4a;
K562NoneCTCF (07-729)2wgEncodeEH000529Raw datawgEncodeEH000535GSM822311234 MBfastq2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-08; subId=481; setType=exp; md5sum=f5483a78de4fddd0f3b92e3edb3beea7;
K562NoneCTCF (07-729)3wgEncodeEH000529AlignmentswgEncodeEH000535GSM8223115.7 MBbam.bai2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1538; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=1e9414d3104dc112e5dbabe958c251b0;
K562NoneCTCF (07-729)3wgEncodeEH000529AlignmentswgEncodeEH000535GSM822311539 MBbam2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1538; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=d8c249b29be04638c9b23cc197c7dba1;
K562NoneCTCF (07-729)3wgEncodeEH000529Raw datawgEncodeEH000535GSM822311513 MBfastq2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-08; subId=481; setType=exp; md5sum=6f38b2c666e66d2ea2cacb4ce5b6f079;
K562NoneCTCF (07-729)  wgEncodeEH000529PeakswgEncodeEH000535GSM8223111.4 MBnarrowPeak2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2011-01-12; subId=1538; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipK562CtcfPk; md5sum=984abaf5e5a6fa22237906bc107644ac;
K562NoneCTCF (07-729)  wgEncodeEH000529Base overlap signalwgEncodeEH000535GSM822311161 MBbigWig2009-02-272009-11-27origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1538; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipK562CtcfBaseOverlapSignal; md5sum=9dccab6eae0c53c747788ef69a6e8ede;
K562NoneInput  wgEncodeEH000529SignalwgEncodeEH000529GSM8222934.2 GBbigWig2008-12-052009-08-05origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-18; subId=1606; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipK562InputSig; md5sum=782bf5a344f4a710fe91b369b1d9ee71;
K562NoneInput  wgEncodeEH000529Raw datawgEncodeEH000529GSM822293666 MBfastq2008-12-052009-08-05origAssembly=hg18; dataVersion=ENCODE Feb 2009 Freeze; subId=109; setType=input; labVersion=Illumina; md5sum=faef9165afd3051ee701f853027a4d34;
K562NoneInput  wgEncodeEH000529AlignmentswgEncodeEH000529GSM8222935.8 MBbam.bai2008-12-052009-08-05origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-18; subId=1606; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=6dc006badd2f47beb55e0b14517ba4a3;
K562NoneInput  wgEncodeEH000529AlignmentswgEncodeEH000529GSM822293717 MBbam2008-12-052009-08-05origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-18; subId=1606; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=7ff0918d3b3ab1496824af7488de1a17;
K562NonePOL2 (MMS-126R)  wgEncodeEH000529ValidationwgEncodeEH000555GSM822275 48 MBtgz2011-03-212011-03-21dataVersion=ENCODE Mar 2012 Freeze; subId=3832; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=1ed0e72b3eebdf93ffedec9ed945696b;
K562NonePOL2 (MMS-126R)  wgEncodeEH000529SignalwgEncodeEH000555GSM8222752.4 GBbigWig2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2011-01-12; subId=1541; setType=exp; labVersion=fseq v 1.84, iff_K562; tableName=wgEncodeOpenChromChipK562Pol2Sig; md5sum=5bb41aa2179a19a05518a75aea37e446;
K562NonePOL2 (MMS-126R)1wgEncodeEH000529AlignmentswgEncodeEH000555GSM8222755.7 MBbam.bai2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1541; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=48be89e0a1bcdbcab50121211570baf5;
K562NonePOL2 (MMS-126R)1wgEncodeEH000529AlignmentswgEncodeEH000555GSM822275489 MBbam2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1541; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=430800736a44af531dad4f97f89ee865;
K562NonePOL2 (MMS-126R)1wgEncodeEH000529Raw datawgEncodeEH000555GSM822275465 MBfastq2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=588; setType=exp; md5sum=0cb2219e1742000f919c7b74b042a8ec;
K562NonePOL2 (MMS-126R)2wgEncodeEH000529AlignmentswgEncodeEH000555GSM822275905 MBbam2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1541; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=af9f57932eeb79b4e46b76597b24df2a;
K562NonePOL2 (MMS-126R)2wgEncodeEH000529Raw datawgEncodeEH000555GSM8222751.0 GBfastq2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=588; setType=exp; md5sum=be625e4898d465f75fd1f350e6beeecb;
K562NonePOL2 (MMS-126R)  wgEncodeEH000529PeakswgEncodeEH000555GSM8222752.8 MBnarrowPeak2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2011-01-12; subId=1541; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipK562Pol2Pk; md5sum=cce54edb5e2bd0631db9d67b6025055e;
K562NonePOL2 (MMS-126R)  wgEncodeEH000529Base overlap signalwgEncodeEH000555GSM822275182 MBbigWig2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1541; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipK562Pol2BaseOverlapSignal; md5sum=d1210e4a2aaf005be098667cc80e4208;
K562NonePOL2 (MMS-126R)2wgEncodeEH000529AlignmentswgEncodeEH000555GSM8222755.7 MBbam.bai2009-09-292010-06-29origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1541; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=07add7b4e318af4cda2ad9db0e520bae;
K562Nonec-Myc (sc-764)  wgEncodeEH000529ValidationwgEncodeEH000536GSM822310 48 MBtgz2011-03-212011-03-21dataVersion=ENCODE Mar 2012 Freeze; subId=3832; setType=exp; labVersion=1% ENCODE array platform validation tests; md5sum=1c69f30938898c91098f969c6bd46fa0;
K562Nonec-Myc (sc-764)  wgEncodeEH000529SignalwgEncodeEH000536GSM8223102.6 GBbigWig2009-02-272009-11-27origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1543; setType=exp; labVersion=fseq v 1.84, iff_K562; tableName=wgEncodeOpenChromChipK562CmycSig; md5sum=ac8a6c353b4fdbf087f31e54f56643f5;
K562Nonec-Myc (sc-764)1wgEncodeEH000529AlignmentswgEncodeEH000536GSM8223105.6 MBbam.bai2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1543; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=1e25d10dbf7cb56296b5090ddf0eb0bc;
K562Nonec-Myc (sc-764)1wgEncodeEH000529AlignmentswgEncodeEH000536GSM822310412 MBbam2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1543; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=9eff836229f83a0cf38614f075b72729;
K562Nonec-Myc (sc-764)1wgEncodeEH000529Raw datawgEncodeEH000536GSM822310400 MBfastq2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-08; subId=482; setType=exp; md5sum=79cc7260d5c1c77f6cfd586aadd18984;
K562Nonec-Myc (sc-764)2wgEncodeEH000529Raw datawgEncodeEH000536GSM822310315 MBfastq2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-08; subId=482; setType=exp; md5sum=65aaa71a340369df8dca70a50a78a92a;
K562Nonec-Myc (sc-764)3wgEncodeEH000529Raw datawgEncodeEH000536GSM822310364 MBfastq2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; dateResubmitted=2009-09-08; subId=482; setType=exp; md5sum=59b616640a9f9254f8515e7748cc5934;
K562Nonec-Myc (sc-764)  wgEncodeEH000529PeakswgEncodeEH000536GSM822310672 KBnarrowPeak2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1543; setType=exp; labVersion=p-value cutoff: 0.01; tableName=wgEncodeOpenChromChipK562CmycPk; md5sum=286efa162c05702c48d2945e6062b946;
K562Nonec-Myc (sc-764)  wgEncodeEH000529Base overlap signalwgEncodeEH000536GSM822310178 MBbigWig2009-02-272009-11-27origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1543; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipK562CmycBaseOverlapSignal; md5sum=b3051f4439559401743c547b289d4f56;
K562Nonec-Myc (sc-764)2wgEncodeEH000529AlignmentswgEncodeEH000536GSM8223105.5 MBbam.bai2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1543; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=46900ae534c93255a3080635413e11c3;
K562Nonec-Myc (sc-764)2wgEncodeEH000529AlignmentswgEncodeEH000536GSM822310286 MBbam2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1543; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=987882ebc78baa6bc53babce7e53d439;
K562Nonec-Myc (sc-764)3wgEncodeEH000529AlignmentswgEncodeEH000536GSM8223105.6 MBbam.bai2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1543; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=522f4542d9d3b9efffaab5766cc85ec7;
K562Nonec-Myc (sc-764)3wgEncodeEH000529AlignmentswgEncodeEH000536GSM822310326 MBbam2009-03-202009-12-20origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1543; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=0547986e5dd992de98ab149d8ca2e932;
Kidney OC  Input  wgEncodeEH003451SignalwgEncodeEH003451GSM10068684.0 GBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7527; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipKidneyocInputSig; md5sum=950a5c86269ca0db5efe0ea733600958;
Kidney OC  Input  wgEncodeEH003451Raw datawgEncodeEH003451GSM10068681.0 GBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7527; setType=input; md5sum=c4386b4fd0d5e8c97a1adb4f3a791c6e;
Kidney OC  Input  wgEncodeEH003451AlignmentswgEncodeEH003451  5.8 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7527; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=a49791638573f4a03ae5023926d94671;
Kidney OC  Input  wgEncodeEH003451AlignmentswgEncodeEH003451  634 MBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7527; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=3f675164d2ab9cf61fee87c6fdf8c19f;
Kidney OC  CTCF (07-729)1wgEncodeEH003451SignalwgEncodeEH003461GSM10068863.9 GBbigWig2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7540; setType=exp; labVersion=fseq v 1.84, iff_Kidney; tableName=wgEncodeOpenChromChipKidneyocCtcfSigRep1; md5sum=dbba87de1702ea09537182190b7c8012;
Kidney OC  CTCF (07-729)3wgEncodeEH003451Raw datawgEncodeEH003461GSM1006886871 MBfastq2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7540; setType=exp; md5sum=d5f8d3bf23da0dc8901e93b2ca0deb1a;
Kidney OC  CTCF (07-729)2wgEncodeEH003451Raw datawgEncodeEH003461GSM1006886392 MBfastq2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7540; setType=exp; md5sum=5681bd3366b495c22c506ca4c5a158f0;
Kidney OC  CTCF (07-729)1wgEncodeEH003451Raw datawgEncodeEH003461GSM1006886872 MBfastq2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7540; setType=exp; md5sum=b0d1c481253f6e7c2e9ed9b2092b2eda;
Kidney OC  CTCF (07-729)1wgEncodeEH003451PeakswgEncodeEH003461GSM10068861.2 MBnarrowPeak2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7540; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipKidneyocCtcfPkRep1; md5sum=6ba80d27e22dd023aa986abda961e8c1;
Kidney OC  CTCF (07-729)1wgEncodeEH003451Base overlap signalwgEncodeEH003461GSM10068861023 MBbigWig2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7540; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipKidneyocCtcfBaseOverlapSignalRep1; md5sum=8ab756e5b9666361bb3aea88de2416ea;
Kidney OC  CTCF (07-729)3wgEncodeEH003451AlignmentswgEncodeEH003461  5.7 MBbam.bai2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7540; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=0eae5991fe965b1c3e67f4adf55a93fe;
Kidney OC  CTCF (07-729)3wgEncodeEH003451AlignmentswgEncodeEH003461  444 MBbam2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7540; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=4b71ed68afd459b69cba920f887ef171;
Kidney OC  CTCF (07-729)2wgEncodeEH003451AlignmentswgEncodeEH003461  5.5 MBbam.bai2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7540; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=df6baf88227077e4ae7196585b373fbe;
Kidney OC  CTCF (07-729)2wgEncodeEH003451AlignmentswgEncodeEH003461  214 MBbam2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7540; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=401a2e242d3de492b669b957cd404729;
Kidney OC  CTCF (07-729)1wgEncodeEH003451AlignmentswgEncodeEH003461  5.7 MBbam.bai2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7540; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=596c9ecfe91299dec5a864a8f91c0ac4;
Kidney OC  CTCF (07-729)1wgEncodeEH003451AlignmentswgEncodeEH003461  604 MBbam2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7540; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=4be67d4351f58b2ba8f02d4df5e7b384;
LNCaP  Input  wgEncodeEH003452SignalwgEncodeEH003452GSM10068793.6 GBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7522; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipLncapInputSig; md5sum=258a30ac6efbaac039d5f9fae61e403d;
LNCaP  Input  wgEncodeEH003452Raw datawgEncodeEH003452GSM1006879908 MBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7522; setType=input; md5sum=56b7cea16528ced8bc079b4f380ed99c;
LNCaP  Input  wgEncodeEH003452AlignmentswgEncodeEH003452  5.7 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7522; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=4c1fcb163701c81720941205b66337d1;
LNCaP  Input  wgEncodeEH003452AlignmentswgEncodeEH003452  481 MBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7522; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=1680f75ef8336851fae15654707ef974;
LNCaP  CTCF (07-729)1wgEncodeEH003452SignalwgEncodeEH003459GSM10068743.5 GBbigWig2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7538; setType=exp; labVersion=fseq v 1.84, iff_LnCAP; tableName=wgEncodeOpenChromChipLncapCtcfSigRep1; md5sum=66fb1f71074d6da1db2f9e65c42e1431;
LNCaP  CTCF (07-729)2wgEncodeEH003452Raw datawgEncodeEH003459GSM1006874612 MBfastq2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7538; setType=exp; md5sum=026e6c155721a161c5f85146297442b9;
LNCaP  CTCF (07-729)1wgEncodeEH003452Raw datawgEncodeEH003459GSM1006874824 MBfastq2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7538; setType=exp; md5sum=8f38a8469b51db5700430cc2dce2e866;
LNCaP  CTCF (07-729)1wgEncodeEH003452PeakswgEncodeEH003459GSM10068741.2 MBnarrowPeak2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7538; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipLncapCtcfPkRep1; md5sum=92cc26545cddc9889006c0bbab6c3a83;
LNCaP  CTCF (07-729)1wgEncodeEH003452Base overlap signalwgEncodeEH003459GSM1006874992 MBbigWig2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7538; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipLncapCtcfBaseOverlapSignalRep1; md5sum=0f115aebff8f02108146e39cf5c6666e;
LNCaPMethyltrienoloneCTCF (07-729)1wgEncodeEH003452AlignmentswgEncodeEH003460  5.8 MBbam.bai2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7539; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=49f35a769c2baa35e0f961dbc3285b66;
LNCaPMethyltrienoloneCTCF (07-729)1wgEncodeEH003452AlignmentswgEncodeEH003460  542 MBbam2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7539; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=a101acf7b4e950d4a25f3cd6145c79e9;
LNCaPMethyltrienoloneCTCF (07-729)1wgEncodeEH003452Base overlap signalwgEncodeEH003460GSM1006887954 MBbigWig2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7539; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipLncapCtcfAndroBaseOverlapSignalRep1; md5sum=4a7852e5816ebb8eedf4d33f619733f5;
LNCaPMethyltrienoloneCTCF (07-729)1wgEncodeEH003452PeakswgEncodeEH003460GSM10068871.2 MBnarrowPeak2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7539; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipLncapCtcfAndroPkRep1; md5sum=f8f3b52f1d1a700e914ecf1756f6cea7;
LNCaPMethyltrienoloneCTCF (07-729)1wgEncodeEH003452Raw datawgEncodeEH003460GSM1006887625 MBfastq2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7539; setType=exp; md5sum=e04f23e301df64f315480f0fde7b55b3;
LNCaPMethyltrienoloneCTCF (07-729)1wgEncodeEH003452SignalwgEncodeEH003460GSM10068873.6 GBbigWig2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7539; setType=exp; labVersion=fseq v 1.84, iff_LnCAP; tableName=wgEncodeOpenChromChipLncapCtcfAndroSigRep1; md5sum=b55ddd53160ae830f013fdfd6bd1671c;
LNCaPMethyltrienoloneCTCF (07-729)2wgEncodeEH003452AlignmentswgEncodeEH003460  5.7 MBbam.bai2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7539; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=6db8217790a5256bd393c4b5b98f9891;
LNCaPMethyltrienoloneCTCF (07-729)2wgEncodeEH003452AlignmentswgEncodeEH003460  406 MBbam2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7539; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=52200cbf05b45620110631c7b0bf6100;
LNCaPMethyltrienoloneCTCF (07-729)2wgEncodeEH003452Raw datawgEncodeEH003460GSM1006887458 MBfastq2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7539; setType=exp; md5sum=f11e4cc0e0e2305c6eaf3a97d861b8ae;
LNCaP  CTCF (07-729)2wgEncodeEH003452AlignmentswgEncodeEH003459  5.7 MBbam.bai2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7538; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=b59c91a5a128289ab79787575eb1f9a0;
LNCaP  CTCF (07-729)2wgEncodeEH003452AlignmentswgEncodeEH003459  552 MBbam2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7538; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=c3ce8dfea8ff6a86af84e3ba68773c82;
LNCaP  CTCF (07-729)1wgEncodeEH003452AlignmentswgEncodeEH003459  5.8 MBbam.bai2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7538; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=854a71f104a6e13f2a5bc69f31b6d3bb;
LNCaP  CTCF (07-729)1wgEncodeEH003452AlignmentswgEncodeEH003459  635 MBbam2012-07-302013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7538; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=4ee4d2531aa0d84b0d26896e4073ac3b;
Lung_OC  Input  wgEncodeEH003453SignalwgEncodeEH003453GSM10068803.1 GBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7526; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipLungocInputSig; md5sum=5e3e21bb4f6d922d38ac55b3778e86c9;
Lung_OC  Input  wgEncodeEH003453Raw datawgEncodeEH003453GSM1006880664 MBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7526; setType=input; md5sum=96389a564e29509fc2faa65e717d4db8;
Lung_OC  Input  wgEncodeEH003453AlignmentswgEncodeEH003453  5.6 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7526; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=019e09d0392a8c3c24c1aabea152760c;
Lung_OC  Input  wgEncodeEH003453AlignmentswgEncodeEH003453  376 MBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7526; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=16b1aff73c4254b35ae3ce1b09ca987f;
Lung_OC  CTCF (07-729)1wgEncodeEH003453SignalwgEncodeEH003462GSM10068823.5 GBbigWig2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7543; setType=exp; labVersion=fseq v 1.84, iff_Lung; tableName=wgEncodeOpenChromChipLungocCtcfSigRep1; md5sum=82fb9e24e141651cad30fde83edf300f;
Lung_OC  CTCF (07-729)2wgEncodeEH003453Raw datawgEncodeEH003462GSM1006882367 MBfastq2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7543; setType=exp; md5sum=0d1357083494235ac82dfc9e8e5348c2;
Lung_OC  CTCF (07-729)1wgEncodeEH003453Raw datawgEncodeEH003462GSM1006882587 MBfastq2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7543; setType=exp; md5sum=e9e250edea446c143e44a688fa939d20;
Lung_OC  CTCF (07-729)1wgEncodeEH003453PeakswgEncodeEH003462GSM10068821.1 MBnarrowPeak2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7543; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipLungocCtcfPkRep1; md5sum=8f64283db264f5c1c21ae25f6526d502;
Lung_OC  CTCF (07-729)1wgEncodeEH003453Base overlap signalwgEncodeEH003462GSM1006882884 MBbigWig2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7543; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipLungocCtcfBaseOverlapSignalRep1; md5sum=6e878d8eaf71bf02c3c90ab4f3ad4c74;
Lung_OC  CTCF (07-729)2wgEncodeEH003453AlignmentswgEncodeEH003462  5.6 MBbam.bai2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7543; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=a2785af0e859554b1aab2d36614079cb;
Lung_OC  CTCF (07-729)2wgEncodeEH003453AlignmentswgEncodeEH003462  279 MBbam2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7543; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=20f031ea3c14e96b52379119f202fa9e;
Lung_OC  CTCF (07-729)1wgEncodeEH003453AlignmentswgEncodeEH003462  5.6 MBbam.bai2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7543; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=adc2daec64e4adf7daa90f34b6b85687;
Lung_OC  CTCF (07-729)1wgEncodeEH003453AlignmentswgEncodeEH003462  402 MBbam2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7543; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=1edc8df00f57370a6da6b3bda092c23a;
MCF-7NoneCTCF (07-729)  wgEncodeEH000589SignalwgEncodeEH000598GSM8223053.0 GBbigWig2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1580; setType=exp; labVersion=fseq v 1.84, iff_MCF7; tableName=wgEncodeOpenChromChipMcf7CtcfSig; md5sum=e571b7261138ee39de4bde330018149d;
MCF-7NoneCTCF (07-729)1wgEncodeEH000589Raw datawgEncodeEH000598GSM822305806 MBfastq2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; subId=884; setType=exp; md5sum=6a9a967f5fb8216c48726339eb549ce4;
MCF-7NoneCTCF (07-729)2wgEncodeEH000589Raw datawgEncodeEH000598GSM822305915 MBfastq2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; subId=884; setType=exp; md5sum=4c3ffa144de1488fb762aad6c6876522;
MCF-7NoneCTCF (07-729)  wgEncodeEH000589PeakswgEncodeEH000598GSM8223051.3 MBnarrowPeak2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1580; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMcf7CtcfPk; md5sum=2a7778dac2cb0e23cb3a83c5eea41cf9;
MCF-7NoneCTCF (07-729)  wgEncodeEH000589Base overlap signalwgEncodeEH000598GSM822305265 MBbigWig2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1580; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMcf7CtcfBaseOverlapSignal; md5sum=c158e59bea1530ecd7824c8e19dab722;
MCF-7NoneCTCF (07-729)1wgEncodeEH000589AlignmentswgEncodeEH000598GSM8223055.7 MBbam.bai2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1580; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=602299fdc3125198929d74342df10dd0;
MCF-7NoneCTCF (07-729)1wgEncodeEH000589AlignmentswgEncodeEH000598GSM822305789 MBbam2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1580; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=fe704d42067e1ce265e3eaa8e0d68909;
MCF-7NoneCTCF (07-729)2wgEncodeEH000589AlignmentswgEncodeEH000598GSM8223055.7 MBbam.bai2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1580; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=321e606c1c7ed3a2b9fad17c2730cf82;
MCF-7NoneCTCF (07-729)2wgEncodeEH000589AlignmentswgEncodeEH000598GSM822305891 MBbam2009-12-282010-09-28origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1580; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=f1cdeda8b02e54e5a7732af96b2636f5;
MCF-7NoneInput  wgEncodeEH000589SignalwgEncodeEH000589GSM8222834.4 GBbigWig2009-12-222010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-22; subId=1834; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipMcf7InputSig; md5sum=78db549a6772a68e73403e017650cfbd;
MCF-7NoneInput  wgEncodeEH000589Raw datawgEncodeEH000589GSM822283849 MBfastq2009-12-222010-09-22origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; subId=866; setType=input; md5sum=a50029660a56274542b1b9bf3a1024bd;
MCF-7NoneInput  wgEncodeEH000589AlignmentswgEncodeEH000589GSM8222836.1 MBbam.bai2009-12-222010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-22; subId=1834; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=f32cc452beae010fec42c84e9b03d9df;
MCF-7NoneInput  wgEncodeEH000589AlignmentswgEncodeEH000589GSM822283984 MBbam2009-12-222010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-22; subId=1834; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=af4ee4b58bdfb92878ee0035295474ca;
MCF-7NonePOL2 (MMS-126R)  wgEncodeEH000589SignalwgEncodeEH001130GSM8222951.5 GBbigWig2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2495; setType=exp; labVersion=fseq v 1.84, iff_MCF7; tableName=wgEncodeOpenChromChipMcf7Pol2Sig; md5sum=42ce7255186688d5881ea9cb5b6b81c7;
MCF-7NonePOL2 (MMS-126R)1wgEncodeEH000589AlignmentswgEncodeEH001130GSM8222956.0 MBbam.bai2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2495; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=9a48914f8ca7f7f3b24954665148552a;
MCF-7NonePOL2 (MMS-126R)1wgEncodeEH000589AlignmentswgEncodeEH001130GSM8222951001 MBbam2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2495; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=3fc7a5fc647f75ec15397cbc8e731ffb;
MCF-7NonePOL2 (MMS-126R)1wgEncodeEH000589Raw datawgEncodeEH001130GSM822295877 MBfastq2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2495; setType=exp; md5sum=370f92afe8a636afc509e5946651b947;
MCF-7NonePOL2 (MMS-126R)2wgEncodeEH000589AlignmentswgEncodeEH001130GSM822295954 MBbam2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2495; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=cac2f2ca52dc7f0a6448e3ccf2204205;
MCF-7NonePOL2 (MMS-126R)2wgEncodeEH000589Raw datawgEncodeEH001130GSM822295858 MBfastq2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2495; setType=exp; md5sum=985ae9d76701893603bc8bec0c029cef;
MCF-7NonePOL2 (MMS-126R)  wgEncodeEH000589PeakswgEncodeEH001130GSM8222952.1 MBnarrowPeak2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2495; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMcf7Pol2PkRep1; md5sum=d1cebd057ea17dd9de18487291bd39de;
MCF-7NonePOL2 (MMS-126R)  wgEncodeEH000589Base overlap signalwgEncodeEH001130GSM822295383 MBbigWig2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2495; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMcf7Pol2BaseOverlapSignal; md5sum=e4d4a98d05318da7160cbbc4791ba83d;
MCF-7NonePOL2 (MMS-126R)2wgEncodeEH000589AlignmentswgEncodeEH001130GSM8222956.0 MBbam.bai2010-10-152011-07-15origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2495; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=175e61d3d3d6d100acc23064743f5b32;
MCF-7Estradiol 100 nMCTCF (07-729)  wgEncodeEH000589SignalwgEncodeEH001131GSM8223095.1 GBbigWig2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2502; setType=exp; labVersion=fseq v 1.84, iff_MCF7; tableName=wgEncodeOpenChromChipMcf7CtcfEstroSig; md5sum=c9c9b8ab3ece7e97aad4cd7163c1c073;
MCF-7Estradiol 100 nMCTCF (07-729)1wgEncodeEH000589Raw datawgEncodeEH001131GSM8223091.4 GBfastq2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2502; setType=exp; md5sum=3e46b33103320ac66d233ec3656504a0;
MCF-7Estradiol 100 nMCTCF (07-729)2wgEncodeEH000589Raw datawgEncodeEH001131GSM8223091.4 GBfastq2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2502; setType=exp; md5sum=e396639e76ca8be3160884eb591e3563;
MCF-7Estradiol 100 nMCTCF (07-729)  wgEncodeEH000589PeakswgEncodeEH001131GSM8223091.3 MBnarrowPeak2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2502; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMcf7CtcfEstroPkRep1; md5sum=eb4322e60c37f8b88cbfc12a9abe8c4f;
MCF-7Estradiol 100 nMCTCF (07-729)  wgEncodeEH000589Base overlap signalwgEncodeEH001131GSM822309637 MBbigWig2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2502; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMcf7CtcfEstroBaseOverlapSignal; md5sum=6d40f266af8f3b71930056c4052cb905;
MCF-7Estradiol 100 nMCTCF (07-729)1wgEncodeEH000589AlignmentswgEncodeEH001131GSM8223096.3 MBbam.bai2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2502; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=a14446295131c8edf01c127334427954;
MCF-7Estradiol 100 nMCTCF (07-729)1wgEncodeEH000589AlignmentswgEncodeEH001131GSM8223091.6 GBbam2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2502; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=4f37357d3bd4cc180642e03c49ec7a2c;
MCF-7Estradiol 100 nMCTCF (07-729)2wgEncodeEH000589AlignmentswgEncodeEH001131GSM8223096.3 MBbam.bai2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2502; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=945c7b33ce5ac406fd51087561fee2e4;
MCF-7Estradiol 100 nMCTCF (07-729)2wgEncodeEH000589AlignmentswgEncodeEH001131GSM8223091.6 GBbam2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2502; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=4f9ba92d0a7d65776bdc61a1b5975378;
MCF-7Estradiol 100 nMc-Myc (sc-764)  wgEncodeEH000589SignalwgEncodeEH001134GSM8223042.3 GBbigWig2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2503; setType=exp; labVersion=fseq v 1.84, iff_MCF7; tableName=wgEncodeOpenChromChipMcf7CmycEstroSig; md5sum=0282eec6fd400d049da8db1b301ab5e4;
MCF-7Estradiol 100 nMc-Myc (sc-764)1wgEncodeEH000589AlignmentswgEncodeEH001134GSM8223046.2 MBbam.bai2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2503; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=6f9e0041bd107684ce5cd3686224287e;
MCF-7Estradiol 100 nMc-Myc (sc-764)1wgEncodeEH000589AlignmentswgEncodeEH001134GSM8223041.5 GBbam2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2503; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=594616943fff9d12eeec3b46ea61b3ed;
MCF-7Estradiol 100 nMc-Myc (sc-764)1wgEncodeEH000589PeakswgEncodeEH001134GSM822304377 KBnarrowPeak2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2503; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMcf7CmycEstroPkRep1; md5sum=bea123167eb09018fddc1f18affb7aa9;
MCF-7Estradiol 100 nMc-Myc (sc-764)1wgEncodeEH000589Raw datawgEncodeEH001134GSM8223041.4 GBfastq2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2503; setType=exp; md5sum=65c6553a41d94e026f83f14c7aa940eb;
MCF-7Estradiol 100 nMc-Myc (sc-764)2wgEncodeEH000589AlignmentswgEncodeEH001134GSM8223046.4 MBbam.bai2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2503; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=d6cd1c56b2e1aa2e8f7b6f1b85c495ce;
MCF-7Estradiol 100 nMc-Myc (sc-764)2wgEncodeEH000589AlignmentswgEncodeEH001134GSM8223041.6 GBbam2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2503; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=d1417675a3a73c9f349c09b0ccbdf6df;
MCF-7Estradiol 100 nMc-Myc (sc-764)2wgEncodeEH000589Raw datawgEncodeEH001134GSM8223041.4 GBfastq2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2503; setType=exp; md5sum=1d1def9ab536ed88c77c918ea96dd93b;
MCF-7Estradiol 100 nMc-Myc (sc-764)  wgEncodeEH000589Base overlap signalwgEncodeEH001134GSM822304649 MBbigWig2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2503; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMcf7CmycEstroBaseOverlapSignal; md5sum=b22dc17c76058bedb2863ea6650660af;
MCF-7serum-starved mediaCTCF (07-729)  wgEncodeEH000589SignalwgEncodeEH003437GSM10068783.0 GBbigWig2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5616; setType=exp; labVersion=fseq v 1.84, iff_MCF7; tableName=wgEncodeOpenChromChipMcf7CtcfSerumstvdSig; md5sum=4666feef48ddda62f8822fc93386d5a6;
MCF-7serum-starved mediaCTCF (07-729)1wgEncodeEH000589AlignmentswgEncodeEH003437  5.9 MBbam.bai2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5616; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=b454d8d0ab47b73d8948e0fd6ba523f6;
MCF-7serum-starved mediaCTCF (07-729)1wgEncodeEH000589AlignmentswgEncodeEH003437  1.1 GBbam2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5616; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=6ac34e5ef7a3aa98b3334203cad14d5b;
MCF-7serum-starved mediaCTCF (07-729)1wgEncodeEH000589PeakswgEncodeEH003437GSM10068781.1 MBnarrowPeak2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5616; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMcf7CtcfSerumstvdPkRep1; md5sum=44b518e1404ae5f3b5ab8c9aeafaca71;
MCF-7serum-starved mediaCTCF (07-729)1wgEncodeEH000589Raw datawgEncodeEH003437GSM10068781.1 GBfastq2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5616; setType=exp; md5sum=5857428be9cf64b70d288afd06dcb89c;
MCF-7serum-starved mediaCTCF (07-729)2wgEncodeEH000589Raw datawgEncodeEH003437GSM10068781.2 GBfastq2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5616; setType=exp; md5sum=a1b059d72b2b30191ee1028c8d3abbda;
MCF-7serum-starved mediaCTCF (07-729)  wgEncodeEH000589Base overlap signalwgEncodeEH003437GSM10068781.1 GBbigWig2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5616; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMcf7CtcfSerumstvdBaseOverlapSignal; md5sum=52dc339b43faa0c9fa9606a2701c9037;
MCF-7serum-starved mediaCTCF (07-729)2wgEncodeEH000589AlignmentswgEncodeEH003437  5.9 MBbam.bai2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5616; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=b2fbd595cc2eeed9fdb0342e95e4afab;
MCF-7serum-starved mediaCTCF (07-729)2wgEncodeEH000589AlignmentswgEncodeEH003437  1.2 GBbam2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5616; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=e2fab780aaf4bee24f03352db1c37307;
MCF-7serum-starved mediaPOL2 (MMS-126R)  wgEncodeEH000589SignalwgEncodeEH003438GSM10068652.5 GBbigWig2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5617; setType=exp; labVersion=fseq v 1.84, iff_MCF7; tableName=wgEncodeOpenChromChipMcf7Pol2SerumstvdSig; md5sum=f9c2f559ebf50a142f412bc35d791f02;
MCF-7serum-starved mediaPOL2 (MMS-126R)1wgEncodeEH000589AlignmentswgEncodeEH003438  5.9 MBbam.bai2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5617; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=f64c34bd4c310c1098a49ec51ba7e7ea;
MCF-7serum-starved mediaPOL2 (MMS-126R)1wgEncodeEH000589AlignmentswgEncodeEH003438  1.1 GBbam2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5617; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=208a3ff0a4619915aaebf0b998ae8025;
MCF-7serum-starved mediaPOL2 (MMS-126R)1wgEncodeEH000589PeakswgEncodeEH003438GSM10068651.6 MBnarrowPeak2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5617; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMcf7Pol2SerumstvdPkRep1; md5sum=6c970fe6171530858254a42b1d2ffae6;
MCF-7serum-starved mediaPOL2 (MMS-126R)1wgEncodeEH000589Raw datawgEncodeEH003438GSM10068651.1 GBfastq2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5617; setType=exp; md5sum=b71f74e123f3ce3dfacdfc60a7be3305;
MCF-7serum-starved mediaPOL2 (MMS-126R)2wgEncodeEH000589AlignmentswgEncodeEH003438  5.9 MBbam.bai2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5617; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=8debf9358621199b09813d369cee3d35;
MCF-7serum-starved mediaPOL2 (MMS-126R)2wgEncodeEH000589AlignmentswgEncodeEH003438  1.1 GBbam2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5617; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=5403f8985ceabd75ddd990ed69a290a7;
MCF-7serum-starved mediaPOL2 (MMS-126R)2wgEncodeEH000589Raw datawgEncodeEH003438GSM10068651.1 GBfastq2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5617; setType=exp; md5sum=0641919dfd1f8706aa42b3275b49dfa0;
MCF-7serum-starved mediaPOL2 (MMS-126R)  wgEncodeEH000589Base overlap signalwgEncodeEH003438GSM10068651.1 GBbigWig2012-02-132012-11-12dataVersion=ENCODE Mar 2012 Freeze; subId=5617; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMcf7Pol2SerumstvdBaseOverlapSignal; md5sum=6547f2f1c1c271507eac6019668f75b2;
MCF-7serum-starved mediac-Myc (sc-764)  wgEncodeEH000589SignalwgEncodeEH003439GSM10068662.8 GBbigWig2012-03-232012-12-23dataVersion=ENCODE Mar 2012 Freeze; subId=6196; setType=exp; labVersion=fseq v 1.84, iff_MCF7; tableName=wgEncodeOpenChromChipMcf7CmycSerumstvdSig; md5sum=e3d6a410c3468491d554b7c294e336ca;
MCF-7serum-starved mediac-Myc (sc-764)1wgEncodeEH000589AlignmentswgEncodeEH003439  5.9 MBbam.bai2012-03-232012-12-23dataVersion=ENCODE Mar 2012 Freeze; subId=6196; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=207ef645fb949e6605f6c233ac1c49cb;
MCF-7serum-starved mediac-Myc (sc-764)1wgEncodeEH000589AlignmentswgEncodeEH003439  1.0 GBbam2012-03-232012-12-23dataVersion=ENCODE Mar 2012 Freeze; subId=6196; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=66077b5998348c24ad85c0af6b06cdd0;
MCF-7serum-starved mediac-Myc (sc-764)1wgEncodeEH000589PeakswgEncodeEH003439GSM1006866446 KBnarrowPeak2012-03-232012-12-23dataVersion=ENCODE Mar 2012 Freeze; subId=6196; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMcf7CmycSerumstvdPkRep1; md5sum=2264dbd85b777cefec625966d59f9942;
MCF-7serum-starved mediac-Myc (sc-764)1wgEncodeEH000589Raw datawgEncodeEH003439GSM10068661.1 GBfastq2012-03-232012-12-23dataVersion=ENCODE Mar 2012 Freeze; subId=6196; setType=exp; md5sum=61f6a18cd29019b92c5dd30078135068;
MCF-7serum-starved mediac-Myc (sc-764)2wgEncodeEH000589AlignmentswgEncodeEH003439  5.9 MBbam.bai2012-03-232012-12-23dataVersion=ENCODE Mar 2012 Freeze; subId=6196; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=7441c9d4667493cd1f3426fae229e1f5;
MCF-7serum-starved mediac-Myc (sc-764)2wgEncodeEH000589AlignmentswgEncodeEH003439  1.0 GBbam2012-03-232012-12-23dataVersion=ENCODE Mar 2012 Freeze; subId=6196; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=c5156972894d4aaf2647a7d821ac46af;
MCF-7serum-starved mediac-Myc (sc-764)2wgEncodeEH000589Raw datawgEncodeEH003439GSM10068661.1 GBfastq2012-03-232012-12-23dataVersion=ENCODE Mar 2012 Freeze; subId=6196; setType=exp; md5sum=b4a39f2804b85e11aa784113c500927d;
MCF-7serum-starved mediac-Myc (sc-764)  wgEncodeEH000589Base overlap signalwgEncodeEH003439GSM10068661.1 GBbigWig2012-03-232012-12-23dataVersion=ENCODE Mar 2012 Freeze; subId=6196; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMcf7CmycSerumstvdBaseOverlapSignal; md5sum=59469ff8eb88468961627a5ba658d3b1;
MCF-7serum-stimulated mediaCTCF (07-729)  wgEncodeEH000589SignalwgEncodeEH003434GSM10068752.7 GBbigWig2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5613; setType=exp; labVersion=fseq v 1.84, iff_MCF7; tableName=wgEncodeOpenChromChipMcf7CtcfSerumstimSig; md5sum=4c7328d2aea2fc0299f076d188206194;
MCF-7serum-stimulated mediaCTCF (07-729)1wgEncodeEH000589AlignmentswgEncodeEH003434  5.8 MBbam.bai2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5613; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=7163ef8eb6fb00e1320ee766fdee6273;
MCF-7serum-stimulated mediaCTCF (07-729)1wgEncodeEH000589AlignmentswgEncodeEH003434  1.1 GBbam2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5613; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=7a84ddafe3fae9cac8ac13a7b1989b2e;
MCF-7serum-stimulated mediaCTCF (07-729)1wgEncodeEH000589PeakswgEncodeEH003434GSM10068751.3 MBnarrowPeak2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5613; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMcf7CtcfSerumstimPkRep1; md5sum=95394af7bd63442938449bc55a19bea7;
MCF-7serum-stimulated mediaCTCF (07-729)1wgEncodeEH000589Raw datawgEncodeEH003434GSM10068751.1 GBfastq2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5613; setType=exp; md5sum=0b4e84205e655e04e3273b17fffd8ed2;
MCF-7serum-stimulated mediaCTCF (07-729)2wgEncodeEH000589Raw datawgEncodeEH003434GSM10068751.1 GBfastq2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5613; setType=exp; md5sum=54facbc63c88f749c570ae272d380100;
MCF-7serum-stimulated mediaCTCF (07-729)  wgEncodeEH000589Base overlap signalwgEncodeEH003434GSM10068751.0 GBbigWig2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5613; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMcf7CtcfSerumstimBaseOverlapSignal; md5sum=df2f4b241ef7cf2325d57b959a72f99b;
MCF-7serum-stimulated mediaCTCF (07-729)2wgEncodeEH000589AlignmentswgEncodeEH003434  5.7 MBbam.bai2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5613; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=478fa46eec33d3b41cf0d2bda48494f2;
MCF-7serum-stimulated mediaCTCF (07-729)2wgEncodeEH000589AlignmentswgEncodeEH003434  1.0 GBbam2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5613; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=2fa9acc27ccb58ee35fc3cc48a1d73e9;
MCF-7serum-stimulated mediaPOL2 (MMS-126R)  wgEncodeEH000589SignalwgEncodeEH003435GSM10068762.4 GBbigWig2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5614; setType=exp; labVersion=fseq v 1.84, iff_MCF7; tableName=wgEncodeOpenChromChipMcf7Pol2SerumstimSig; md5sum=5b48ce173ca0d658d4eb1bdd5d04e4e5;
MCF-7serum-stimulated mediaPOL2 (MMS-126R)1wgEncodeEH000589AlignmentswgEncodeEH003435  5.8 MBbam.bai2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5614; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=a91009c576f34d97e9a7ef04a7dfb79c;
MCF-7serum-stimulated mediaPOL2 (MMS-126R)1wgEncodeEH000589AlignmentswgEncodeEH003435  1018 MBbam2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5614; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=8e2263d50f5d33f4f8f8ead8ec42951f;
MCF-7serum-stimulated mediaPOL2 (MMS-126R)1wgEncodeEH000589PeakswgEncodeEH003435GSM10068761.5 MBnarrowPeak2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5614; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMcf7Pol2SerumstimPkRep1; md5sum=5125c16af17d12c111cc557b5d208526;
MCF-7serum-stimulated mediaPOL2 (MMS-126R)1wgEncodeEH000589Raw datawgEncodeEH003435GSM10068761.1 GBfastq2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5614; setType=exp; md5sum=fc3ca9538f45aff52889dc81b8555ffc;
MCF-7serum-stimulated mediaPOL2 (MMS-126R)2wgEncodeEH000589AlignmentswgEncodeEH003435  5.9 MBbam.bai2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5614; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=513f5d7af65f1c75be8a88308c3636eb;
MCF-7serum-stimulated mediaPOL2 (MMS-126R)2wgEncodeEH000589AlignmentswgEncodeEH003435  1.1 GBbam2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5614; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=b43ed7caee993d1887966e1840793bbe;
MCF-7serum-stimulated mediaPOL2 (MMS-126R)2wgEncodeEH000589Raw datawgEncodeEH003435GSM10068761.1 GBfastq2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5614; setType=exp; md5sum=05972ee0669713bb8b447080c827094e;
MCF-7serum-stimulated mediaPOL2 (MMS-126R)  wgEncodeEH000589Base overlap signalwgEncodeEH003435GSM10068761.1 GBbigWig2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5614; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMcf7Pol2SerumstimBaseOverlapSignal; md5sum=817b7951625d19c16bb4ba34b1991cf7;
MCF-7serum-stimulated mediac-Myc (sc-764)  wgEncodeEH000589SignalwgEncodeEH003436GSM10068772.7 GBbigWig2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5615; setType=exp; labVersion=fseq v 1.84, iff_MCF7; tableName=wgEncodeOpenChromChipMcf7CmycSerumstimSig; md5sum=9a1b71f2ca22540fe47c89694778c0c2;
MCF-7serum-stimulated mediac-Myc (sc-764)1wgEncodeEH000589AlignmentswgEncodeEH003436  5.7 MBbam.bai2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5615; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=85b629776bc0618c9e636d8c33926c74;
MCF-7serum-stimulated mediac-Myc (sc-764)1wgEncodeEH000589AlignmentswgEncodeEH003436  1.5 GBbam2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5615; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=723b94a95e35c639b76eace975800a24;
MCF-7serum-stimulated mediac-Myc (sc-764)1wgEncodeEH000589PeakswgEncodeEH003436GSM10068771.0 MBnarrowPeak2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5615; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMcf7CmycSerumstimPkRep1; md5sum=ad98c9d0ebbb2d569d21ff92750c60a5;
MCF-7serum-stimulated mediac-Myc (sc-764)1wgEncodeEH000589Raw datawgEncodeEH003436GSM10068771.9 GBfastq2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5615; setType=exp; md5sum=a0b6435ccc8d7883fe8a198b7f6e40ca;
MCF-7serum-stimulated mediac-Myc (sc-764)2wgEncodeEH000589AlignmentswgEncodeEH003436  5.9 MBbam.bai2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5615; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=26bb4e44008608a09a20fd4c544eb88f;
MCF-7serum-stimulated mediac-Myc (sc-764)2wgEncodeEH000589AlignmentswgEncodeEH003436  1.1 GBbam2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5615; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=21521dd12af92dff7e795725f80cc72d;
MCF-7serum-stimulated mediac-Myc (sc-764)2wgEncodeEH000589Raw datawgEncodeEH003436GSM10068771.2 GBfastq2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5615; setType=exp; md5sum=9b93e44c177b71705c5c53f850d8e664;
MCF-7serum-stimulated mediac-Myc (sc-764)  wgEncodeEH000589Base overlap signalwgEncodeEH003436GSM10068771.1 GBbigWig2012-02-112012-11-11dataVersion=ENCODE Mar 2012 Freeze; subId=5615; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMcf7CmycSerumstimBaseOverlapSignal; md5sum=554b5819f928aa71538b29439ddc6fca;
MCF-7VehicleCTCF (07-729)  wgEncodeEH000589SignalwgEncodeEH001132GSM8223084.6 GBbigWig2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2505; setType=exp; labVersion=fseq v 1.84, iff_MCF7; tableName=wgEncodeOpenChromChipMcf7CtcfVehSig; md5sum=8452bed735ecf46f2725287e9bae18ba;
MCF-7VehicleCTCF (07-729)1wgEncodeEH000589AlignmentswgEncodeEH001132GSM8223086.1 MBbam.bai2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2505; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=46ddbd1c92e5c008fa94b9abc80a95cf;
MCF-7VehicleCTCF (07-729)1wgEncodeEH000589AlignmentswgEncodeEH001132GSM8223081.3 GBbam2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2505; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=2394c7f6cfc5681ce37eb68b7b6f8d87;
MCF-7VehicleCTCF (07-729)1wgEncodeEH000589Raw datawgEncodeEH001132GSM8223081.2 GBfastq2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2505; setType=exp; md5sum=0a6bdde8340853b0651ae5374b6db476;
MCF-7VehicleCTCF (07-729)2wgEncodeEH000589Raw datawgEncodeEH001132GSM8223081.1 GBfastq2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2505; setType=exp; md5sum=e5a1de99ebb821a6d89fdb876c44be75;
MCF-7VehicleCTCF (07-729)  wgEncodeEH000589PeakswgEncodeEH001132GSM8223081.4 MBnarrowPeak2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2505; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMcf7CtcfVehPkRep1; md5sum=ad2972e4ab6e0b01298aef5d8a8eae23;
MCF-7VehicleCTCF (07-729)  wgEncodeEH000589Base overlap signalwgEncodeEH001132GSM822308487 MBbigWig2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2505; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMcf7CtcfVehBaseOverlapSignal; md5sum=ed38d8e86f9e258032408d67e82d6517;
MCF-7VehicleCTCF (07-729)2wgEncodeEH000589AlignmentswgEncodeEH001132GSM8223086.1 MBbam.bai2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2505; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=8758c8c2c23d6cb168229c91be4d823e;
MCF-7VehicleCTCF (07-729)2wgEncodeEH000589AlignmentswgEncodeEH001132GSM8223081.2 GBbam2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2505; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=82b289023adaad17b34ed589d53c8775;
MCF-7Vehiclec-Myc (sc-764)  wgEncodeEH000589SignalwgEncodeEH001133GSM8223012.3 GBbigWig2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2504; setType=exp; labVersion=fseq v 1.84, iff_MCF7; tableName=wgEncodeOpenChromChipMcf7CmycVehSig; md5sum=d64fe6c1d7c55ad862dc3988815ec917;
MCF-7Vehiclec-Myc (sc-764)1wgEncodeEH000589AlignmentswgEncodeEH001133GSM8223015.9 MBbam.bai2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2504; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=b89e86e8a637966d217f945c56f851b9;
MCF-7Vehiclec-Myc (sc-764)1wgEncodeEH000589AlignmentswgEncodeEH001133GSM822301854 MBbam2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2504; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=ec57082fd8c8206f6ab158fce21e9a63;
MCF-7Vehiclec-Myc (sc-764)1wgEncodeEH000589Raw datawgEncodeEH001133GSM8223011.2 GBfastq2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2504; setType=exp; md5sum=ffe77bc6be2de28593a7bf90608d209b;
MCF-7Vehiclec-Myc (sc-764)2wgEncodeEH000589AlignmentswgEncodeEH001133GSM8223016.0 MBbam.bai2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2504; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=fc95b2fe8b3bb57e2f09d482e8967205;
MCF-7Vehiclec-Myc (sc-764)2wgEncodeEH000589AlignmentswgEncodeEH001133GSM8223011.2 GBbam2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2504; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=2099fab6d38caa9e2572c8a2dd0d2c69;
MCF-7Vehiclec-Myc (sc-764)2wgEncodeEH000589Raw datawgEncodeEH001133GSM8223011.2 GBfastq2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2504; setType=exp; md5sum=17e0fbe3f94e55a76ee889d84341efc4;
MCF-7Vehiclec-Myc (sc-764)  wgEncodeEH000589PeakswgEncodeEH001133GSM822301817 KBnarrowPeak2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2504; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMcf7CmycVehPkRep1; md5sum=f17bfac31153100ea484b0a73946e194;
MCF-7Vehiclec-Myc (sc-764)  wgEncodeEH000589Base overlap signalwgEncodeEH001133GSM822301372 MBbigWig2010-10-162011-07-16origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=2504; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMcf7CmycVehBaseOverlapSignal; md5sum=95efee2a1802c02bd991bb8fd7deff23;
Medullo  Input  wgEncodeEH003441SignalwgEncodeEH003441GSM10068924.0 GBbigWig2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7323; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipMedulloInputSig; md5sum=3fc45b2ffa8fcaa55c3f68d8e5b296c3;
Medullo  Input  wgEncodeEH003441Raw datawgEncodeEH003441GSM10068921017 MBfastq2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7323; setType=input; md5sum=e02fb1268f699cbdabeb0a2156c0112f;
Medullo  Input  wgEncodeEH003441AlignmentswgEncodeEH003441  6.0 MBbam.bai2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7323; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=fd64a1833d83841e8c4b15aa34ffe2ce;
Medullo  Input  wgEncodeEH003441AlignmentswgEncodeEH003441  963 MBbam2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7323; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=f49d51dc0c4f9d27a43acdd7edc10f00;
Medullo  CTCF (07-729)  wgEncodeEH003441SignalwgEncodeEH003440GSM10068933.8 GBbigWig2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7325; setType=exp; labVersion=fseq v 1.84, iff_D721; tableName=wgEncodeOpenChromChipMedulloCtcfSig; md5sum=15ea10fffb285f5bba3d3a8bfc084e96;
Medullo  CTCF (07-729)2wgEncodeEH003441Raw datawgEncodeEH003440GSM10068931.1 GBfastq2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7325; setType=exp; md5sum=8549c0b2ed65a9e16e7b97316fa4402c;
Medullo  CTCF (07-729)1wgEncodeEH003441Raw datawgEncodeEH003440GSM1006893787 MBfastq2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7325; setType=exp; md5sum=abb4603969c7443ad0cd0c334c2376f0;
Medullo  CTCF (07-729)1wgEncodeEH003441PeakswgEncodeEH003440GSM10068931.1 MBnarrowPeak2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7325; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipMedulloCtcfPkRep1; md5sum=622afeb1b860c907cac627b9d9c150be;
Medullo  CTCF (07-729)  wgEncodeEH003441Base overlap signalwgEncodeEH003440GSM10068931.1 GBbigWig2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7325; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipMedulloCtcfBaseOverlapSignal; md5sum=1fa844b95862d91648da5610d9c75eda;
Medullo  CTCF (07-729)2wgEncodeEH003441AlignmentswgEncodeEH003440  6.0 MBbam.bai2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7325; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=3fcb35555fb25d570218d9f3b653fb82;
Medullo  CTCF (07-729)2wgEncodeEH003441AlignmentswgEncodeEH003440  1.0 GBbam2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7325; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=efbc05b2e2b9b3c62e742ddcab7af626;
Medullo  CTCF (07-729)1wgEncodeEH003441AlignmentswgEncodeEH003440  5.8 MBbam.bai2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7325; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=e886b7be183a35ccb8231ef010400fd7;
Medullo  CTCF (07-729)1wgEncodeEH003441AlignmentswgEncodeEH003440  779 MBbam2012-07-062013-04-06dataVersion=ENCODE Jul 2012 Freeze; subId=7325; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=08b33996fafdea70a673a0938c4a810f;
Monocytes CD14+ RO01746NoneInput  wgEncodeEH001137SignalwgEncodeEH001137GSM8222964.0 GBbigWig2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3271; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipMonocd14ro1746InputSig; md5sum=10c502bdfbdcdbf2fffee2318626c6e7;
Monocytes CD14+ RO01746NoneInput  wgEncodeEH001137Raw datawgEncodeEH001137GSM8222961.0 GBfastq2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3271; setType=input; md5sum=f8628418043a552db8de137ffdadcabf;
Monocytes CD14+ RO01746NoneInput  wgEncodeEH001137AlignmentswgEncodeEH001137GSM8222966.0 MBbam.bai2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3271; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=543d82be8f8ca67f7313949a86733e7d;
Monocytes CD14+ RO01746NoneInput  wgEncodeEH001137AlignmentswgEncodeEH001137GSM8222961.1 GBbam2011-01-172011-10-17origAssembly=hg19; dataVersion=ENCODE Jan 2011 Freeze; subId=3271; setType=input; labVersion=align_on_cluster_bwa.pl v 1; md5sum=490c5d71e6c847ca77d93b562f173a6a;
NHEKNoneCTCF (07-729)  generic_femaleSignalwgEncodeEH000559GSM8222712.6 GBbigWig2009-09-302010-06-30origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1539; setType=exp; labVersion=fseq v 1.84, iff_generic_female; tableName=wgEncodeOpenChromChipNhekCtcfSig; md5sum=84ed7d10bea8e3b18ebb03a9f3c87c2b;
NHEKNoneCTCF (07-729)1generic_femaleRaw datawgEncodeEH000559GSM822271581 MBfastq2009-09-302010-06-30origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=624; setType=exp; md5sum=594b3053658ae156d87456abaee6cf6f;
NHEKNoneCTCF (07-729)2generic_femaleRaw datawgEncodeEH000559GSM822271548 MBfastq2009-09-302010-06-30origAssembly=hg18; dataVersion=ENCODE Sep 2009 Freeze; subId=624; setType=exp; md5sum=74d0f1b86a363f808b9f1b2ce4025a90;
NHEKNoneCTCF (07-729)  generic_femalePeakswgEncodeEH000559GSM8222711.2 MBnarrowPeak2009-09-302010-06-30origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1539; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipNhekCtcfPk; md5sum=5def847dbb8a583b91d6da68b345c434;
NHEKNoneCTCF (07-729)  generic_femaleBase overlap signalwgEncodeEH000559GSM822271124 MBbigWig2009-09-302010-06-30origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1539; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipNhekCtcfBaseOverlapSignal; md5sum=34df3542a3a540eefc53a062d3c25e08;
NHEKNoneCTCF (07-729)1generic_femaleAlignmentswgEncodeEH000559GSM8222715.5 MBbam.bai2009-09-302010-06-30origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1539; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=c231cdb8dc973cea4584a02a488a1ce3;
NHEKNoneCTCF (07-729)1generic_femaleAlignmentswgEncodeEH000559GSM822271497 MBbam2009-09-302010-06-30origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1539; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=bd3fa70c82f88d94c75de76ceeddd591;
NHEKNoneCTCF (07-729)2generic_femaleAlignmentswgEncodeEH000559GSM8222715.6 MBbam.bai2009-09-302010-06-30origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1539; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=6af0b26a067ea150410d7c05b6540798;
NHEKNoneCTCF (07-729)2generic_femaleAlignmentswgEncodeEH000559GSM822271515 MBbam2009-09-302010-06-30origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-17; subId=1539; setType=exp; labVersion=align_on_cluster_bwa.pl v 1; md5sum=1c5ae1e8842a492830a129065f4f6643;
Pancreas OC  Input  wgEncodeEH003454SignalwgEncodeEH003454GSM10068714.5 GBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7523; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipPancreasocInputSig; md5sum=06e0597fbb1f21d23b166f13d444df9f;
Pancreas OC  Input  wgEncodeEH003454Raw datawgEncodeEH003454GSM10068711.3 GBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7523; setType=input; md5sum=60338db24c818b8a01a5d096150d2649;
Pancreas OC  Input  wgEncodeEH003454AlignmentswgEncodeEH003454  6.1 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7523; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=26b2eccd2b5c402c9bd678923cfdab05;
Pancreas OC  Input  wgEncodeEH003454AlignmentswgEncodeEH003454  1.1 GBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7523; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=b2b0615289bd62fd19ac48687a773199;
Pancreas OC  CTCF (07-729)1wgEncodeEH003454SignalwgEncodeEH003463GSM10068813.1 GBbigWig2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7545; setType=exp; labVersion=fseq v 1.84, iff_Pancreas; tableName=wgEncodeOpenChromChipPancreasocCtcfSigRep1; md5sum=7163fdc4f482fce1f02ec66aaf01d024;
Pancreas OC  CTCF (07-729)2wgEncodeEH003454Raw datawgEncodeEH003463GSM1006881506 MBfastq2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7545; setType=exp; md5sum=6cdb620d4fba1203b4edf8d8cbd15558;
Pancreas OC  CTCF (07-729)1wgEncodeEH003454Raw datawgEncodeEH003463GSM1006881573 MBfastq2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7545; setType=exp; md5sum=3946ff549517f15e2d218dabb86cfe82;
Pancreas OC  CTCF (07-729)1wgEncodeEH003454PeakswgEncodeEH003463GSM10068811.1 MBnarrowPeak2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7545; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipPancreasocCtcfPkRep1; md5sum=3e9e9a4015fdbb07ab56b493fb6a354a;
Pancreas OC  CTCF (07-729)1wgEncodeEH003454Base overlap signalwgEncodeEH003463GSM1006881888 MBbigWig2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7545; setType=exp; labVersion=baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipPancreasocCtcfBaseOverlapSignalRep1; md5sum=58ab9654d9915d8e9d427d146ef90d9a;
Pancreas OC  CTCF (07-729)2wgEncodeEH003454AlignmentswgEncodeEH003463  5.6 MBbam.bai2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7545; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=006ca40196b860b25ef54784b24e3dae;
Pancreas OC  CTCF (07-729)2wgEncodeEH003454AlignmentswgEncodeEH003463  384 MBbam2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7545; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=19d148ee9ed4c31b8ca3a52747f2d2bb;
Pancreas OC  CTCF (07-729)1wgEncodeEH003454AlignmentswgEncodeEH003463  5.6 MBbam.bai2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7545; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=ab53a3434c3a40bc9ce32431fa1394c3;
Pancreas OC  CTCF (07-729)1wgEncodeEH003454AlignmentswgEncodeEH003463  384 MBbam2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7545; setType=exp; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=5accce939e98c93a055e0fea4ebfa312;
ProgFibNoneCTCF (07-729)  wgEncodeEH000593SignalwgEncodeEH000600GSM8222725.4 GBbigWig2010-01-022010-10-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1657; setType=exp; labVersion=privacy-noSequence fseq v 1.84, iff_FB0167P; tableName=wgEncodeOpenChromChipProgfibCtcfSig; md5sum=88f498c99eb611a53eb6d734f7be2627;
ProgFibNoneCTCF (07-729)1wgEncodeEH000593AlignmentswgEncodeEH000600GSM8222725.9 MBbam.bai2010-01-022010-10-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1657; setType=exp; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=c6c8bc9285a19b11eb90893955605d09;
ProgFibNoneCTCF (07-729)1wgEncodeEH000593AlignmentswgEncodeEH000600GSM822272571 MBbam2010-01-022010-10-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1657; setType=exp; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=77acfa12f34d420e7ec34f6fad5f889c;
ProgFibNoneCTCF (07-729)1wgEncodeEH000593PeakswgEncodeEH000600GSM8222721.1 MBnarrowPeak2010-01-022010-10-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1657; setType=exp; labVersion=privacy-noSequence p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipProgfibCtcfPkRep1; md5sum=b206dcb204aba0d956dffd12095ddc12;
ProgFibNoneCTCF (07-729)  wgEncodeEH000593Base overlap signalwgEncodeEH000600GSM822272287 MBbigWig2010-01-022010-10-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1657; setType=exp; labVersion=privacy-noSequence baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipProgfibCtcfBaseOverlapSignal; md5sum=49121e163375eb91b2bacde791f2f0d0;
ProgFibNoneCTCF (07-729)2wgEncodeEH000593AlignmentswgEncodeEH000600GSM8222725.9 MBbam.bai2010-01-022010-10-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1657; setType=exp; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=5e40a5f387e81ac2055a935a085f6ec9;
ProgFibNoneCTCF (07-729)2wgEncodeEH000593AlignmentswgEncodeEH000600GSM822272550 MBbam2010-01-022010-10-02origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1657; setType=exp; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=92e8605b20e95980ed0bad990f2ee952;
ProgFibNoneInput  wgEncodeEH000593SignalwgEncodeEH000593GSM8222694.4 GBbigWig2009-12-232010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-22; subId=1832; setType=input; labVersion=privacy-noSequence fseq v 1.84; tableName=wgEncodeOpenChromChipProgfibInputSig; md5sum=8bd8a3811ae589a90b1aca3faa28085b;
ProgFibNoneInput  wgEncodeEH000593AlignmentswgEncodeEH000593GSM8222696.1 MBbam.bai2009-12-232010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-22; subId=1832; setType=input; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=65f00f8e614a4aeab2bb871c90337292;
ProgFibNoneInput  wgEncodeEH000593AlignmentswgEncodeEH000593GSM822269770 MBbam2009-12-232010-09-22origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-22; subId=1832; setType=input; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=1a759e20bda9d3191d38fded13bf9c59;
ProgFibNonePOL2 (MMS-126R)  wgEncodeEH000593SignalwgEncodeEH000606GSM8222821.8 GBbigWig2010-01-102010-10-10origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1652; setType=exp; labVersion=privacy-noSequence fseq v 1.84, iff_FB0167P; tableName=wgEncodeOpenChromChipProgfibPol2Sig; md5sum=6f9a94bc5fd2e7ae7e161162a639d057;
ProgFibNonePOL2 (MMS-126R)1wgEncodeEH000593AlignmentswgEncodeEH000606GSM8222826.0 MBbam.bai2010-01-102010-10-10origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1652; setType=exp; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=6256f52e58c0ab3b07493ac7d397c30f;
ProgFibNonePOL2 (MMS-126R)1wgEncodeEH000593AlignmentswgEncodeEH000606GSM822282626 MBbam2010-01-102010-10-10origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1652; setType=exp; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=05b7208b6d9aef9ad895295d9b620123;
ProgFibNonePOL2 (MMS-126R)1wgEncodeEH000593PeakswgEncodeEH000606GSM8222822.1 MBnarrowPeak2010-01-102010-10-10origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1652; setType=exp; labVersion=privacy-noSequence p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipProgfibPol2PkRep1; md5sum=1b1edb6a3d0322e1bd22b4a472e739d9;
ProgFibNonePOL2 (MMS-126R)  wgEncodeEH000593Base overlap signalwgEncodeEH000606GSM822282176 MBbigWig2010-01-102010-10-10origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1652; setType=exp; labVersion=privacy-noSequence baseAlignCounts.pl v 1; tableName=wgEncodeOpenChromChipProgfibPol2BaseOverlapSignal; md5sum=ab54164fe8ac926a2acda80a9d0bf5a9;
ProgFibNonePOL2 (MMS-126R)2wgEncodeEH000593AlignmentswgEncodeEH000606GSM8222825.5 MBbam.bai2010-01-102010-10-10origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1652; setType=exp; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=20e151758e6ed2840010cc4c8258be4a;
ProgFibNonePOL2 (MMS-126R)2wgEncodeEH000593AlignmentswgEncodeEH000606GSM822282503 MBbam2010-01-102010-10-10origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-06-19; subId=1652; setType=exp; labVersion=privacy-noSequence align_on_cluster_bwa.pl v 1; md5sum=14d6eba1644fc4bcb61fdadc4a6543a3;
Spleen_OC  Input  wgEncodeEH003455SignalwgEncodeEH003455GSM10068724.2 GBbigWig2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7528; setType=input; labVersion=fseq v 1.84; tableName=wgEncodeOpenChromChipSpleenocInputSig; md5sum=7532deca62e94ff20d2d4baeb387b1e9;
Spleen_OC  Input  wgEncodeEH003455Raw datawgEncodeEH003455GSM10068721.4 GBfastq2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7528; setType=input; md5sum=d8dc9458e16a1ace359c21fba6e63f31;
Spleen_OC  Input  wgEncodeEH003455AlignmentswgEncodeEH003455  5.8 MBbam.bai2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7528; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=e50941f15a9c09304197b0496841a861;
Spleen_OC  Input  wgEncodeEH003455AlignmentswgEncodeEH003455  825 MBbam2012-07-262013-04-26dataVersion=ENCODE Jul 2012 Freeze; subId=7528; setType=input; labVersion=align_on_cluster_bwa.pl v 1. first 35bps only; md5sum=10e74ec3f6a11912efad06d9e288294b;
Spleen_OC  CTCF (07-729)1wgEncodeEH003455SignalwgEncodeEH003464GSM10068834.1 GBbigWig2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7544; setType=exp; labVersion=fseq v 1.84, iff_Spleen; tableName=wgEncodeOpenChromChipSpleenocCtcfSigRep1; md5sum=3e054cc1ec3f3d6bbb4d1c0cd9501a4a;
Spleen_OC  CTCF (07-729)2wgEncodeEH003455Raw datawgEncodeEH003464GSM10068831.2 GBfastq2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7544; setType=exp; md5sum=6caf3da334d4c1fcbd8100c53dac7019;
Spleen_OC  CTCF (07-729)1wgEncodeEH003455Raw datawgEncodeEH003464GSM10068831.4 GBfastq2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7544; setType=exp; md5sum=af1e399f16e126b5bf92ec2566a8a676;
Spleen_OC  CTCF (07-729)1wgEncodeEH003455PeakswgEncodeEH003464GSM10068831.2 MBnarrowPeak2012-07-312013-04-30dataVersion=ENCODE Jul 2012 Freeze; subId=7544; setType=exp; labVersion=p-value cutoff: 0.05; tableName=wgEncodeOpenChromChipSpleenocCtcfPkRep1; md5sum=40bca92b83bf3c44b8a04a79f5933a63;
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    602 filesRestriction Policy
Data version: ENCODE July 2011 Freeze

Description

These tracks display chromatin immunoprecipitation (ChIP-seq) evidence as part of the four Open Chromatin track sets (see below). ChIP-seq is a method to identify the specific location of proteins that are directly or indirectly bound to genomic DNA. By identifying the binding location of sequence-specific transcription factors, general transcription machinery components, and chromatin factors, ChIP can help in the functional annotation of the open chromatin regions identified by DNaseI HS mapping and FAIRE.

Together with DNaseI HS and FAIRE experiments, these tracks display the locations of active regulatory elements identified as open chromatin in multiple cell types from the Duke, UNC-Chapel Hill, UT-Austin, and EBI ENCODE group. Within this project, open chromatin was identified using two independent and complementary methods: DNaseI hypersensitivity (HS) and Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE), combined with these ChIP-seq assays for select regulatory factors. DNaseI HS and FAIRE provide assay cross-validation with commonly identified regions delineating the highest confidence areas of open chromatin. These ChIP assays provide functional validation and preliminary annotation of a subset of open chromatin sites. Each method employed Illumina (formerly Solexa) sequencing by synthesis as the detection platform. The Tier 1 and Tier 2 cell types were additionally verified by a second platform, high-resolution 1% ENCODE tiled microarrays supplied by NimbleGen.

As a background control experiment, the input genomic DNA sample that was used for ChIP was sequenced. Crosslinked chromatin was sheared and the crosslinks were reversed without carrying out the immunoprecipitation step. This sample was otherwise processed in a manner identical to the ChIP sample as described below. The input track is useful in revealing potential artifacts arising from the sequence alignment process such as copy number differences between the reference genome and the sequenced samples, as well as regions of poor sequence alignability. For cell lines for which there is no input experiment available, the peaks were generated using the control of generic_male or generic_female, as an attempt to create a general background based on input data from several cell types. These files are in "iff" format, which is used when calling peaks with F-seq software, and can be downloaded from the production lab directly from under the section titled "Copy number / karyotype correction."

Other Open Chromatin track sets:

  • Data for the DNaseI HS experiments can be found in Duke DNaseI HS.
  • Data for the FAIRE experiments can be found in UNC FAIRE.
  • A synthesis of all the open chromatin assays for select cell lines can be found in Open Chrom Synth.

Display Conventions and Configuration

This track is a multi-view composite track that contains a single data type with multiple levels of annotation (views). For each view, there are multiple subtracks representing different cell types that display individually on the browser. Instructions for configuring multi-view tracks are here. ChIP data displayed here represents a continuum of signal intensities. The Iyer lab recommends setting the "Data view scaling: auto-scale" option when viewing signal data in full mode to see the full dynamic range of the data. Note that in regions that do not have open chromatin sites, autoscale will rescale the data and inflate the background signal, making the regions appear noisy. Changing back to fixed scale will alleviate this issue. In general, for each experiment in each of the cell types, the UTA TFBS tracks contain the following views:

Peaks
Regions of enriched signal in ChIP experiments. Peaks were called based on signals created using F-Seq, a software program developed at Duke (Boyle et al., 2008b). Significant regions were determined by fitting the data to a gamma distribution to calculate p-values. Contiguous regions where p-values were below a 0.05/0.01 threshold were considered significant. The solid vertical line in the peak represents the point with highest signal.
F-Seq Density Signal
Density graph (wiggle) of signal enrichment calculated using F-Seq for the combined set of sequences from all replicates. F-Seq employs Parzen kernel density estimation to create base pair scores (Boyle et al., 2008b). This method does not look at fixed-length windows but rather weights contributions of nearby sequences in proportion to their distance from that base. It only considers sequences aligned 4 or less times in the genome and uses an alignability background model to try to correct for regions where sequences cannot be aligned. For each cell type, especially important for those with an abnormal karyotype, a model to try to correct for amplifications and deletions that is based on control input data was also used.
Base Overlap Signal
An alternative version of the F-Seq Density Signal track annotation that provides a higher resolution view of the raw sequence data. This track also includes the combined set of sequences from all replicates. For each sequence, the aligned read is extended 5 bp in both directions from its 5' aligned end where DNase cut the DNA. The score at each base pair represents the number of extended fragments that overlap the base pair.

Peaks and signals displayed in this track are the results of pooled replicates. The raw sequence and alignment files for each replicate are available for download.

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

Methods

Cells were grown according to the approved ENCODE cell culture protocols.

To perform ChIP, proteins were cross-linked to DNA in vivo using 1% formaldehyde solution (Bhinge et al., 2007; ENCODE Project Consortium, 2007). Cross-linked chromatin was sheared by sonication and immunoprecipitated using a specific antibody against the protein of interest. After reversal of the cross-links, the immunoprecipitated DNA was used to identify the genomic location of transcription factor binding. This was accomplished by sequencing of the ends of the immunoprecipitated DNA (ChIP-seq) using the Illumina (Solexa) sequencing system. ChIP data for Tier 1 and Tier 2 cell lines were verified by comparing multiple independent growths (replicates) and determining the reproducibility of the data. For some cell types, additional verification was performed using the same immunoprecipitated DNA by labeling and hybridizing to NimbleGen Human ENCODE tiling arrays (1% of the genome) along with the input DNA as reference (ChIP-chip). A more detailed protocol is available here.

DNA fragments isolated by ChIP are 100-200 bp in length, with the average length being 134 bp. Sequences from each experiment were aligned to the genome using Burrows-Wheeler Aligner (Li et al., 2010) for the GRCh37 (hg19) assembly.

The command used for these alignments was:
> bwa aln -t 8 genome.fa s_1.sequence.txt.bfq > s_1.sequence.txt.sai
Where genome.fa is the whole genome sequence and s_1.sequence.txt.bfq is one lane of sequences converted into the required bfq format.

Sequences from multiple lanes are combined for a single replicate using the bwa samse command, and converted in the sam/bam format using SAMtools.

Only those that aligned to 4 or fewer locations were retained. Other sequences were also filtered based on their alignment to problematic regions (such as satellites and rRNA genes - see supplemental materials). The mappings of these short reads to the genome are available for download.

The resulting digital signal was converted to a continuous wiggle track using F-Seq that employs Parzen kernel density estimation to create base pair scores (Boyle et al., 2008b). Input data has been generated for several cell lines. These are used directly to create a control/background model used for F-Seq when generating signal annotations for these cell lines. These models are meant to correct for sequencing biases, alignment artifacts, and copy number changes in these cell lines. Input data is not being generated directly for other cell lines. Instead, a general background model was derived from the available input data sets. This should provide corrections for sequencing biases and alignment artifacts, but will not correct for cell type specific copy number changes.

The exact command used for this step is:
CTCF:
> fseq -l 300 -v -b <bff files> -p <iff files> aligments.bed
c-Myc:
> fseq -l 600 -v -b <bff files> -p <iff files> aligments.bed
PolII:
> fseq -l 800 -v -b <bff files> -p <iff files> aligments.bed
Where the (bff files) are the background files based on alignability, the (iff files) are the background files based on the input experiments, and alignments.bed are a bed file of filtered sequence alignments.

Discrete ChIP sites (peaks) were identified from ChIP-seq F-seq density signal. Significant regions were determined by fitting the data to a gamma distribution to calculate p-values. Contiguous regions where p-values were below a 0.05/0.01 threshold were considered significant.

Data from the high-resolution 1% ENCODE tiled microarrays supplied by NimbleGen were normalized using the Tukey biweight normalization, and peaks were called using ChIPOTle (Buck, et al., 2005) at multiple levels of significance. Regions matched on size to these peaks that were devoid of any significant signal were also created as a null model. These data were used for additional verification of Tier 1 and Tier 2 cell lines by ROC analysis. Files labeled Validation view containing this data are available for download.

Release Notes

Release 2 (August 2011) of this track adds 34 new experiments including 17 new cell lines.

  • Enhancer and Insulator Functional assays: A subset of DNase and FAIRE regions were cloned into functional tissue culture reporter assays to test for enhancer and insulator activity. Coordinates and results from these experiments can be found here.

    Credits

    These data and annotations were created by a collaboration of multiple institutions (contact: Terry Furey)

    We thank NHGRI for ENCODE funding support.

    References

    Bhinge AA, Kim J, Euskirchen GM, Snyder M, Iyer VR. Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE). Genome Res. 2007 Jun;17(6):910-6.

    Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, Furey TS, Crawford GE. High-resolution mapping and characterization of open chromatin across the genome. Cell. 2008 Jan 25;132(2):311-22.

    Boyle AP, Guinney J, Crawford GE, Furey TS. F-Seq: a feature density estimator for high-throughput sequence tags. Bioinformatics. 2008 Nov 1;24(21):2537-8.

    Buck MJ, Nobel AB, Lieb JD. ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data. Genome Biol. 2005;6(11):R97.

    Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, Erdos MR, Green R, Meltzer PS, Wolfsberg TG, Collins FS. DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays. Nat Methods. 2006 Jul;3(7):503-9.

    Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, Davis S, Margulies EH, Chen Y, Bernat JA, Ginsburg D et al. Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS). Genome Res. 2006 Jan;16(1):123-31.

    ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 2007 Jun 14;447(7146):799-816.

    Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD. FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin. Genome Res. 2007 Jun;17(6):877-85.

    Giresi PG, Lieb JD. Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements). Methods. 2009 Jul;48(3):233-9.

    Lee BK, Bhinge AA, Battenhouse A, McDaniell RM, Liu Z, Song L, Ni Y, Birney E, Lieb JD, Furey TS et al. Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells. Genome Res. 2012 Jan;22(1):9-24.

    Li H, Ruan J, Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 2008 Nov;18(11):1851-8.

    Song L, Crawford GE. DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells. Cold Spring Harb Protoc. 2010 Feb;2010(2):pdb.prot5384.

    Publications

    Lee BK, Bhinge AA, Battenhouse A, McDaniell RM, Liu Z, Song L, Ni Y, Birney E, Lieb JD, Furey TS et al. Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells. Genome Res. 2012 Jan;22(1):9-24.

    Data Release Policy

    Data users may freely use ENCODE data, but may not, without prior consent, submit publications that use an unpublished ENCODE dataset until nine months following the release of the dataset. This date is listed in the Restricted Until column on the track configuration page and the download page. The full data release policy for ENCODE is available here.
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